Detailed information of evm.model.Ap12.255 in Astrangia poculata

Genomic Location: Ap12:2468800...2475152
NR annotation: KAJ7340386.1, AP endonuclease 2 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5LG28Probable endonuclease 4 OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2) OX=272559 GN=nfo PE=3 SV=1
Q64WY5Probable endonuclease 4 OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=nfo PE=3 SV=1
Q89YT0Probable endonuclease 4 OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=nfo PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008775 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01261
all species →		AP_endonuc_2Xylose isomerase-like TIM barrelDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001719
all species →		FamilyAP endonuclease 2Interproscan
IPR018246
all species →		Binding_siteAP endonuclease 2, zinc binding siteInterproscan
IPR036237
all species →		Homologous_superfamilyXylose isomerase-like superfamilyInterproscan
IPR013022
all species →		DomainXylose isomerase-like, TIM barrel domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21445
all species →		ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IVInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0003906
all species →		Molecular FunctionDNA-(apurinic or apyrimidinic site) endonuclease activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0006284
all species →		Biological Processbase-excision repairInterproscan
GO:0008081
all species →		Molecular Functionphosphoric diester hydrolase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10771APEX1; AP endonuclease 1EC:3.1.11.2
DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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