Genomic Location: Ap12:27053745...27057806
NR annotation: XP_020620439.1, putative glutathione-specific gamma-glutamylcyclotransferase 2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap12.2558 |
| Transcript |
| evm.model.Ap12.2558 |
| Protein |
| evm.model.Ap12.2558 |
| UniProt accession | Description |
|---|---|
| Q5PPV4 | Putative glutathione-specific gamma-glutamylcyclotransferase 2 OS=Xenopus laevis OX=8355 GN=chac2 PE=2 SV=1 |
| Q9CQG1 | Putative glutathione-specific gamma-glutamylcyclotransferase 2 OS=Mus musculus OX=10090 GN=Chac2 PE=1 SV=1 |
| Q641Z5 | Putative glutathione-specific gamma-glutamylcyclotransferase 2 OS=Rattus norvegicus OX=10116 GN=Chac2 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002270 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04752 all species → | ChaC | ChaC-like protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006840 all species → | Family | Glutathione-specific gamma-glutamylcyclotransferase | Interproscan |
| IPR013024 all species → | Domain | Gamma-glutamyl cyclotransferase-like | Interproscan |
| IPR036568 all species → | Homologous_superfamily | Gamma-glutamyl cyclotransferase-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12192 all species → | CATION TRANSPORT PROTEIN CHAC-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003839 all species → | Molecular Function | gamma-glutamylcyclotransferase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006751 all species → | Biological Process | glutathione catabolic process | Interproscan |
| GO:0061928 all species → | Molecular Function | glutathione specific gamma-glutamylcyclotransferase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K07232 | CHAC, chaC; glutathione-specific gamma-glutamylcyclotransferase | EC:4.3.2.7 | Glutathione metabolism | ko00480 | deepkoala |
Transcript abundance of evm.model.Ap12.2558 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
