Genomic Location: Ap12:27162656...27170283
NR annotation: CAH3167565.1, unnamed protein product [Porites evermanni]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap12.2573 |
| Transcript |
| evm.model.Ap12.2573 |
| Protein |
| evm.model.Ap12.2573 |
| UniProt accession | Description |
|---|---|
| P54358 | DNA polymerase delta catalytic subunit OS=Drosophila melanogaster OX=7227 GN=PolD1 PE=1 SV=2 |
| P97283 | DNA polymerase delta catalytic subunit OS=Mesocricetus auratus OX=10036 GN=POLD1 PE=2 SV=1 |
| P28340 | DNA polymerase delta catalytic subunit OS=Homo sapiens OX=9606 GN=POLD1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000320 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21787 all species → | TNP-like_RNaseH_N | TNP-like, RNase H N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR048365 all species → | Domain | Transposable element P transposase-like, RNase H domain, N-terminal | Interproscan |
| IPR050240 all species → | Family | DNA polymerase type-B | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10322 all species → | DNA POLYMERASE CATALYTIC SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003887 all species → | Molecular Function | DNA-directed DNA polymerase activity | Interproscan |
| GO:0006261 all species → | Biological Process | DNA-templated DNA replication | Interproscan |
| GO:0006287 all species → | Biological Process | base-excision repair, gap-filling | Interproscan |
| GO:0006297 all species → | Biological Process | nucleotide-excision repair, DNA gap filling | Interproscan |
| GO:0008296 all species → | Molecular Function | 3'-5'-DNA exonuclease activity | Interproscan |
| GO:0043625 all species → | Cellular Component | delta DNA polymerase complex | Interproscan |
| GO:0045004 all species → | Biological Process | DNA replication proofreading | Interproscan |
evm.model.Ap12.2573.Transcript abundance of evm.model.Ap12.2573 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
