Gene detail

Detailed information of evm.model.Ap12.2583 in Astrangia poculata

Genomic Location: Ap12:27254684...27256898
NR annotation: XP_020602060.1, E3 ubiquitin-protein ligase TRIM71-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.2583

atggatgttcctaccctgatgcacaacctcaaggaagaagtaagttgttctgtgtgcatgcagttgtacagagaaccaaaacaactgccgtgtttacacactttctgccttgaatgtctgaacaacatagcgagaaccagcgcccgccatggcaagatcaaatgtcctctctgcaagattgaagtcgctgtttccgaaagtggcaccatggaaactctgccaagttgtttttaccggaaaaatctgctggatattttggccatcaaggaatgcagcgcttcaaaagtgacctgtggaaactgcgagaagaagagcaaagaagcatcgtactgttttcactgtgccaggttctggtgtaattcgtgtctcaacgcgcacaacattctacgccctaacagcgaccatcgcgttcttgccctgaaagatttccaagaaagggattttgaagtggttctgaagcggccggcgttttgccagaaggagctacacgagaaagaagtgctgaagttttattgcaaaatgtgtgaaatccctgtgtgtcagaattgcgtgacagttgaacatgctaaacacgatgtggaatttggaagtagctgcaagagcggcgaagcaaaacatggatgctcaactggaagctgcagaaaaagaaacacaaaatttttctgcctgcataagagaattggaggagaaatctcgcaaattcaagatacagttcaagacacaatccaatcgctaatccttaatctgaaacaaagggaacaggaattaattacggaagtagaacaagaggcaaagatagaacaagatcgcgtgacaaaggataaaagaaacatcatcgatcatctaaagaagattgaagacactatgtcacaggcaaggcatttcattgactgcagcacggcagccgagcttgtgacggcaaaaacgttcgtgaaagagctactagaagtacgtccggcaccagaattgatcgcctctgctagtcaaagagaaactaaccagactgtatttgtgaaaaacaaaactctatccaaaagtcttcaaaatgaaggaatcggtcgccttcataaaaccgctacaaaagcaaataaatgtactgtgaaaggctttaatgaagcgaccgccgggctggaaacacgttttaaatttattactcgcaatgctgaaaggaaacaatcatattctcctggtgatcgtgtcgtggtggagttagcctctacagaagatggaaccctcgctggagacatgaaaattgtgcacaagaataatggcagctacgaggtttcttgtattccaaaacgagaaggagaacataaagttactgctcgtgtaaatggagaggaaatcagcgatcttccatcaattcacgtcgagaaacgatcctacaaacttgtgcgaactgtcggtggagaggggactggtgctggagaatttagatggccatggggggtcactgttaatgacaagaatgagatcattgtttgtgatgaggacaatgatcgacttcaagtattcaatgaaaatggagacttcatcagaactattgaacatgagctgctaactcatccaagaggaatatgcattgatagtgcaggcaggatttatgtatcttccgcgagtaagatactgctgtttaatccaaatggagactatatcaaaaaggttggtgatgtggaaaatgaagatgcagaagatgcagaagatgcagattggtatggaatctctttagatgaacagggaaatattattgtctgtcagtggcaggttatatctaatcaagcagtccatattctttttccagaaggtacactgcttaagaaactaactagagatgatttcgatccatttgactgcttgtactatgaaagcaaaatattcgtctctaactgtgccacccatacaatttacgtttttaattgtgaaggaaagtttctcaaagaaattggcacagagggtactggaaatggagaattcattaatcctacaggactagcaatcgacacaacaggacaccttgtagtaattgatgataaccgggtccaagtatttactttagatggaatgtttgtaactaagtttggtaatgatgtattttcagaccctacaggtgtgtcagtacttaaagatggtcgtattattgtcactgattatgtcaaaaatcaattactaatgtttgaatag

Transcript

evm.model.Ap12.2583

ATGGATGTTCCTACCCTGATGCACAACCTCAAGGAAGAAGTAAGTTGTTCTGTGTGCATGCAGTTGTACAGAGAACCAAAACAACTGCCGTGTTTACACACTTTCTGCCTTGAATGTCTGAACAACATAGCGAGAACCAGCGCCCGCCATGGCAAGATCAAATGTCCTCTCTGCAAGATTGAAGTCGCTGTTTCCGAAAGTGGCACCATGGAAACTCTGCCAAGTTGTTTTTACCGGAAAAATCTGCTGGATATTTTGGCCATCAAGGAATGCAGCGCTTCAAAAGTGACCTGTGGAAACTGCGAGAAGAAGAGCAAAGAAGCATCGTACTGTTTTCACTGTGCCAGGTTCTGGTGTAATTCGTGTCTCAACGCGCACAACATTCTACGCCCTAACAGCGACCATCGCGTTCTTGCCCTGAAAGATTTCCAAGAAAGGGATTTTGAAGTGGTTCTGAAGCGGCCGGCGTTTTGCCAGAAGGAGCTACACGAGAAAGAAGTGCTGAAGTTTTATTGCAAAATGTGTGAAATCCCTGTGTGTCAGAATTGCGTGACAGTTGAACATGCTAAACACGATGTGGAATTTGGAAGTAGCTGCAAGAGCGGCGAAGCAAAACATGGATGCTCAACTGGAAGCTGCAGAAAAAGAAACACAAAATTTTTCTGCCTGCATAAGAGAATTGGAGGAGAAATCTCGCAAATTCAAGATACAGTTCAAGACACAATCCAATCGCTAATCCTTAATCTGAAACAAAGGGAACAGGAATTAATTACGGAAGTAGAACAAGAGGCAAAGATAGAACAAGATCGCGTGACAAAGGATAAAAGAAACATCATCGATCATCTAAAGAAGATTGAAGACACTATGTCACAGGCAAGGCATTTCATTGACTGCAGCACGGCAGCCGAGCTTGTGACGGCAAAAACGTTCGTGAAAGAGCTACTAGAAGTACGTCCGGCACCAGAATTGATCGCCTCTGCTAGTCAAAGAGAAACTAACCAGACTGTATTTGTGAAAAACAAAACTCTATCCAAAAGTCTTCAAAATGAAGGAATCGGTCGCCTTCATAAAACCGCTACAAAAGCAAATAAATGTACTGTGAAAGGCTTTAATGAAGCGACCGCCGGGCTGGAAACACGTTTTAAATTTATTACTCGCAATGCTGAAAGGAAACAATCATATTCTCCTGGTGATCGTGTCGTGGTGGAGTTAGCCTCTACAGAAGATGGAACCCTCGCTGGAGACATGAAAATTGTGCACAAGAATAATGGCAGCTACGAGGTTTCTTGTATTCCAAAACGAGAAGGAGAACATAAAGTTACTGCTCGTGTAAATGGAGAGGAAATCAGCGATCTTCCATCAATTCACGTCGAGAAACGATCCTACAAACTTGTGCGAACTGTCGGTGGAGAGGGGACTGGTGCTGGAGAATTTAGATGGCCATGGGGGGTCACTGTTAATGACAAGAATGAGATCATTGTTTGTGATGAGGACAATGATCGACTTCAAGTATTCAATGAAAATGGAGACTTCATCAGAACTATTGAACATGAGCTGCTAACTCATCCAAGAGGAATATGCATTGATAGTGCAGGCAGGATTTATGTATCTTCCGCGAGTAAGATACTGCTGTTTAATCCAAATGGAGACTATATCAAAAAGGTTGGTGATGTGGAAAATGAAGATGCAGAAGATGCAGAAGATGCAGATTGGTATGGAATCTCTTTAGATGAACAGGGAAATATTATTGTCTGTCAGTGGCAGGTTATATCTAATCAAGCAGTCCATATTCTTTTTCCAGAAGGTACACTGCTTAAGAAACTAACTAGAGATGATTTCGATCCATTTGACTGCTTGTACTATGAAAGCAAAATATTCGTCTCTAACTGTGCCACCCATACAATTTACGTTTTTAATTGTGAAGGAAAGTTTCTCAAAGAAATTGGCACAGAGGGTACTGGAAATGGAGAATTCATTAATCCTACAGGACTAGCAATCGACACAACAGGACACCTTGTAGTAATTGATGATAACCGGGTCCAAGTATTTACTTTAGATGGAATGTTTGTAACTAAGTTTGGTAATGATGTATTTTCAGACCCTACAGGTGTGTCAGTACTTAAAGATGGTCGTATTATTGTCACTGATTATGTCAAAAATCAATTACTAATGTTTGAATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D2GXS7	Tripartite motif-containing protein 2 OS=Ailuropoda melanoleuca OX=9646 GN=TRIM2 PE=3 SV=1
F7H9X2	Tripartite motif-containing protein 2 OS=Callithrix jacchus OX=9483 GN=TRIM2 PE=3 SV=1
Q9C040	Tripartite motif-containing protein 2 OS=Homo sapiens OX=9606 GN=TRIM2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000199 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF17170 all species →	DUF5128	6-bladed beta-propeller	Repeat	Interproscan
PF00630 all species →	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF01436 all species →	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050952 all species →	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR001298 all species →	Repeat	Filamin/ABP280 repeat	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104 all species →	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap12.2583.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.