Gene detail

Detailed information of evm.model.Ap12.2608 in Astrangia poculata

Genomic Location: Ap12:27512136...27524520
NR annotation: XP_020620803.1, uncharacterized protein LOC110058493 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.2608

atggcgaatatcaaggtatttgcacgtttgaaaccatgtcaagatataaatcaggaactgatcaggcgtgaagatcaagcagtatatatctatccacctggacaacatctagcgtcgaacggagtcattagttctggctgtgcaaatctgcaagaatcaaaaccactcagatttcggttcgcgcacgtttttggaatggaatcatcgcaaaaaaatgtgttcgatgtagccgcaaaggatattgtcaaacaatttcttgaaggatacaatgcaacaatatttgcttatggcgaaacaggcgctggcaaaacgtacaccattcaaggggaaggagtcgagggtttgaacggtggactaattcctcaaagtctgtccaagatctttcaagaagttggcgataatcagcatgaaacagtcaacattcatctgtcattcctagaaatttataaagagacagcttatgatctgctaggtcctctcctattaaaaggttcaagaaaaaccaaagaattgtcaaaggttctggtaacaatgggaggaaatgattcttgtcatcttcacggcctgtcctatcaccatgtgacatcagaggatgaggcagcacagctttatcggttgggcgtggcaaatcagaagacagacaaaacttctgacaatcagagatcatctagatcacatactgtatttagtattacgatttccaggcaaaggcatggcacagagttatttttgaggtcaaagctaaacttggttgacctagctgggtcagagcatgtacggaaatcaagttctgatggacagcaacccggtgaagcaaaatttgtcagtgtgtctctccaacacttagagtctgtgatcattgccctgcagagatttaacagggggtctttgagaaactgcagtcgaaagaaacaaactgggaaatttttaaaacgcagctcaagtgctactcttagaggagaaagaagtgtggatgccgttccaaagccaagatttaatgagaagctgacaagtgcaagtgctgtagagttaggaaaaggaaagcattctggtctttcagttgattatgaacctgttcttgtaccctacaggaattcactgttgaccatggtgttacaggatagtttaggtgggaactgcattactgcaatgattgcagctttgtctgctgagaagaaaaacttgtctgaaaccatctcgacctgcatgtttgctcaaagagttgcacggatcacgaacaagccaatacgaaatgaagaggttgacaaaaacatggttataagacgtcttcaaacaacactggcaaagcttcacttagaactagccaattacaagcatgagtcactcatattgcgcttggatgacgagagcagtcctgaagatgagcaagattgttctgcagtgatgcgctcttttctcgctggaagaataaacgaccccgtgtcacatggtatcaacacaccaagaaagttccgcacctcgttacgttatctgcgccggatatttgctgggaccactccccaggcactgagagatggggaccaggaacaacagtccgctgacgatagggacagtggcgtgcgcacaggcagtgaacccacatcaccgctgaccagtgaaggtgaaactgatgttcatgtggtgtctaatttcatagcccagctgccatctccagttcccatgatagctgacgcttcacaacacaggttaagtgttacccaggagagtggcatctcattgggcactgaacacgaggaaccaacgccagatgcagacgagtcttcaccaggcccctctcatgaaatacctcagatgtcaggacctggaacgagtgaggtctctactcagaccggcttgctgaagacatgcgaaggaagaaaatctgcaaagaaggacgtctgtttaggagaaggcaaagttcaacccgctggccatgggccgcgtgaggatgtgttgatatgggagcttgaactgcagaaggaggagcttttgaacaagagcaaaatgtttacgtcacggttggctgatcagcgtgcgcgcctcgttgtgatgctgaggcgcggtgaccttcccgaagaattagaaaatgaaaaaattgtggagttgcaacttcagaaaaaacagcgggaagtggagagcaaattgtcttttgtaataaagaagctggcggatttaaagtacactgatcgactcaaacagtgccaggtaaaagcgcaacctcaatcaggaacacaaagttttaaggagctagaacttaaagaggtgtccactcgccagaagctgctcgcccgcagagagcaaatgagaaattttggcttatcgtctccgaccctgtcccaccaatcagcgccgtcgactgcaagcttccggtctggaaccggaagcggtaatgtaactttatcaaggacgtcattaatgacgttacattgggaagatggcgggcgagaaactggggaccaatatcgcactgtaccgggctctccaatctcgtctattcctgcttcaagtagaaacggaaactccaaaccagtggcatcgagaagggaattgaaggacaattcacgtaagatacaccatatggcgctttcttctcaaagttctttttctaagagagggttttcaaaccaggaaagattttacagtagagataaaagcgggacgtcaagaaacgtaggcaaaaactgtccgcttgttgattatatgaacaattctcatcgaactttgtaccacaagtcaacattcccacgtcgcattgagaatggtgtttgttctgatttacgcggtacaaaaagtgcacaaaggacaatgccaaaaaggcaaaaagcgtgcggaaatagtgaagccattttagcaagaagctctttgagttgtttgcagttgaaagaacaatcgtccgactccggtaagacggagtgcatcatggcaatgcctccagacgcagcgaccacagataataaattagttactgcaaatgatgcatctgaggatcaagctaaaatcagcaaacaagaagataaatgtagcgatttcaagaattcacgcctctcatctcctggcgaaacagcggcaagcaagtccagaaaaaaaggccaagaacaaaaactcccctgtcttaacagagaacagcgtgtgcgtgtgttaaaaattcgtgaatgtgtcagtgcggcagaggtcatacaaagaagatggcgtttgtacaagatgaacagaaaaggtgaagggggaaaataa

Transcript

evm.model.Ap12.2608

ATGGCGAATATCAAGGTATTTGCACGTTTGAAACCATGTCAAGATATAAATCAGGAACTGATCAGGCGTGAAGATCAAGCAGTATATATCTATCCACCTGGACAACATCTAGCGTCGAACGGAGTCATTAGTTCTGGCTGTGCAAATCTGCAAGAATCAAAACCACTCAGATTTCGGTTCGCGCACGTTTTTGGAATGGAATCATCGCAAAAAAATGTGTTCGATGTAGCCGCAAAGGATATTGTCAAACAATTTCTTGAAGGATACAATGCAACAATATTTGCTTATGGCGAAACAGGCGCTGGCAAAACGTACACCATTCAAGGGGAAGGAGTCGAGGGTTTGAACGGTGGACTAATTCCTCAAAGTCTGTCCAAGATCTTTCAAGAAGTTGGCGATAATCAGCATGAAACAGTCAACATTCATCTGTCATTCCTAGAAATTTATAAAGAGACAGCTTATGATCTGCTAGGTCCTCTCCTATTAAAAGGTTCAAGAAAAACCAAAGAATTGTCAAAGGTTCTGGTAACAATGGGAGGAAATGATTCTTGTCATCTTCACGGCCTGTCCTATCACCATGTGACATCAGAGGATGAGGCAGCACAGCTTTATCGGTTGGGCGTGGCAAATCAGAAGACAGACAAAACTTCTGACAATCAGAGATCATCTAGATCACATACTGTATTTAGTATTACGATTTCCAGGCAAAGGCATGGCACAGAGTTATTTTTGAGGTCAAAGCTAAACTTGGTTGACCTAGCTGGGTCAGAGCATGTACGGAAATCAAGTTCTGATGGACAGCAACCCGGTGAAGCAAAATTTGTCAGTGTGTCTCTCCAACACTTAGAGTCTGTGATCATTGCCCTGCAGAGATTTAACAGGGGGTCTTTGAGAAACTGCAGTCGAAAGAAACAAACTGGGAAATTTTTAAAACGCAGCTCAAGTGCTACTCTTAGAGGAGAAAGAAGTGTGGATGCCGTTCCAAAGCCAAGATTTAATGAGAAGCTGACAAGTGCAAGTGCTGTAGAGTTAGGAAAAGGAAAGCATTCTGGTCTTTCAGTTGATTATGAACCTGTTCTTGTACCCTACAGGAATTCACTGTTGACCATGGTGTTACAGGATAGTTTAGGTGGGAACTGCATTACTGCAATGATTGCAGCTTTGTCTGCTGAGAAGAAAAACTTGTCTGAAACCATCTCGACCTGCATGTTTGCTCAAAGAGTTGCACGGATCACGAACAAGCCAATACGAAATGAAGAGGTTGACAAAAACATGGTTATAAGACGTCTTCAAACAACACTGGCAAAGCTTCACTTAGAACTAGCCAATTACAAGCATGAGTCACTCATATTGCGCTTGGATGACGAGAGCAGTCCTGAAGATGAGCAAGATTGTTCTGCAGTGATGCGCTCTTTTCTCGCTGGAAGAATAAACGACCCCGTGTCACATGGTATCAACACACCAAGAAAGTTCCGCACCTCGTTACGTTATCTGCGCCGGATATTTGCTGGGACCACTCCCCAGGCACTGAGAGATGGGGACCAGGAACAACAGTCCGCTGACGATAGGGACAGTGGCGTGCGCACAGGCAGTGAACCCACATCACCGCTGACCAGTGAAGGTGAAACTGATGTTCATGTGGTGTCTAATTTCATAGCCCAGCTGCCATCTCCAGTTCCCATGATAGCTGACGCTTCACAACACAGGTTAAGTGTTACCCAGGAGAGTGGCATCTCATTGGGCACTGAACACGAGGAACCAACGCCAGATGCAGACGAGTCTTCACCAGGCCCCTCTCATGAAATACCTCAGATGTCAGGACCTGGAACGAGTGAGGTCTCTACTCAGACCGGCTTGCTGAAGACATGCGAAGGAAGAAAATCTGCAAAGAAGGACGTCTGTTTAGGAGAAGGCAAAGTTCAACCCGCTGGCCATGGGCCGCGTGAGGATGTGTTGATATGGGAGCTTGAACTGCAGAAGGAGGAGCTTTTGAACAAGAGCAAAATGTTTACGTCACGGTTGGCTGATCAGCGTGCGCGCCTCGTTGTGATGCTGAGGCGCGGTGACCTTCCCGAAGAATTAGAAAATGAAAAAATTGTGGAGTTGCAACTTCAGAAAAAACAGCGGGAAGTGGAGAGCAAATTGTCTTTTGTAATAAAGAAGCTGGCGGATTTAAAGTACACTGATCGACTCAAACAGTGCCAGGTAAAAGCGCAACCTCAATCAGGAACACAAAGTTTTAAGGAGCTAGAACTTAAAGAGGTGTCCACTCGCCAGAAGCTGCTCGCCCGCAGAGAGCAAATGAGAAATTTTGGCTTATCGTCTCCGACCCTGTCCCACCAATCAGCGCCGTCGACTGCAAGCTTCCGGTCTGGAACCGGAAGCGGTAATGTAACTTTATCAAGGACGTCATTAATGACGTTACATTGGGAAGATGGCGGGCGAGAAACTGGGGACCAATATCGCACTGTACCGGGCTCTCCAATCTCGTCTATTCCTGCTTCAAGTAGAAACGGAAACTCCAAACCAGTGGCATCGAGAAGGGAATTGAAGGACAATTCACGTAAGATACACCATATGGCGCTTTCTTCTCAAAGTTCTTTTTCTAAGAGAGGGTTTTCAAACCAGGAAAGATTTTACAGTAGAGATAAAAGCGGGACGTCAAGAAACGTAGGCAAAAACTGTCCGCTTGTTGATTATATGAACAATTCTCATCGAACTTTGTACCACAAGTCAACATTCCCACGTCGCATTGAGAATGGTGTTTGTTCTGATTTACGCGGTACAAAAAGTGCACAAAGGACAATGCCAAAAAGGCAAAAAGCGTGCGGAAATAGTGAAGCCATTTTAGCAAGAAGCTCTTTGAGTTGTTTGCAGTTGAAAGAACAATCGTCCGACTCCGGTAAGACGGAGTGCATCATGGCAATGCCTCCAGACGCAGCGACCACAGATAATAAATTAGTTACTGCAAATGATGCATCTGAGGATCAAGCTAAAATCAGCAAACAAGAAGATAAATGTAGCGATTTCAAGAATTCACGCCTCTCATCTCCTGGCGAAACAGCGGCAAGCAAGTCCAGAAAAAAAGGCCAAGAACAAAAACTCCCCTGTCTTAACAGAGAACAGCGTGTGCGTGTGTTAAAAATTCGTGAATGTGTCAGTGCGGCAGAGGTCATACAAAGAAGATGGCGTTTGTACAAGATGAACAGAAAAGGTGAAGGGGGAAAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZMV9	Kinesin-like protein KIF6 OS=Homo sapiens OX=9606 GN=KIF6 PE=1 SV=3
P46870	Kinesin-like protein KLP1 OS=Chlamydomonas reinhardtii OX=3055 GN=KLP1 PE=2 SV=1
P28741	Kinesin-like protein KIF3A OS=Mus musculus OX=10090 GN=Kif3a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001662 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR019821 all species →	Conserved_site	Kinesin motor domain, conserved site	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR027640 all species →	Family	Kinesin-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24115 all species →	KINESIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005871 all species →	Cellular Component	kinesin complex	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap12.2608.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.