Genomic Location: Ap12:27552322...27558772
NR annotation: XP_020620613.1, uncharacterized protein LOC110058316 isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap12.2610 |
| Transcript |
| evm.model.Ap12.2610 |
| Protein |
| evm.model.Ap12.2610 |
| UniProt accession | Description |
|---|---|
| O17645 | Heparan sulfate 2-O-sulfotransferase hst-2 OS=Caenorhabditis elegans OX=6239 GN=hst-2 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002482 (this species only) |
evm.model.Ap12.2610. This gene does have a gene model — the search simply returned no hit.| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007734 all species → | Family | Heparan sulphate 2-O-sulfotransferase | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12129 all species → | HEPARAN SULFATE 2-O-SULFOTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004394 all species → | Molecular Function | heparan sulfate 2-O-sulfotransferase activity | Interproscan |
| GO:0008146 all species → | Molecular Function | sulfotransferase activity | Interproscan |
| GO:0015014 all species → | Biological Process | heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process | Interproscan |
| GO:0015015 all species → | Biological Process | heparan sulfate proteoglycan biosynthetic process, enzymatic modification | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
evm.model.Ap12.2610.Transcript abundance of evm.model.Ap12.2610 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
