Gene detail

Detailed information of evm.model.Ap12.2622 in Astrangia poculata

Genomic Location: Ap12:27671702...27677125
NR annotation: XP_027041049.1, choline dehydrogenase, mitochondrial-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6UPE0	Choline dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Chdh PE=1 SV=1
Q8BJ64	Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1
Q8NE62	Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001469 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05199 all species →	GMC_oxred_C	GMC oxidoreductase	Domain	Interproscan
PF00732 all species →	GMC_oxred_N	GMC oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR007867 all species →	Domain	Glucose-methanol-choline oxidoreductase, C-terminal	Interproscan
IPR000172 all species →	Domain	Glucose-methanol-choline oxidoreductase, N-terminal	Interproscan
IPR011533 all species →	Family	Oxygen-dependent choline dehydrogenase	Interproscan
IPR012132 all species →	Family	Glucose-methanol-choline oxidoreductase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11552 all species →	GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016614 all species →	Molecular Function	oxidoreductase activity, acting on CH-OH group of donors	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0008812 all species →	Molecular Function	choline dehydrogenase activity	Interproscan
GO:0019285 all species →	Biological Process	glycine betaine biosynthetic process from choline	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00108	betA, CHDH; choline dehydrogenase	EC:1.1.99.1	Glycine, serine and threonine metabolism	ko00260	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.