Detailed information of evm.model.Ap12.2641 in Astrangia poculata

Genomic Location: Ap12:27874640...27878554
NR annotation: XP_020620813.1, UPF0573 protein C2orf70 homolog B-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5M7F8Ciliary microtubule inner protein 2C OS=Xenopus laevis OX=8355 GN=cimip2ca PE=2 SV=1
Q5M7D8Ciliary microtubule inner protein 2C OS=Xenopus laevis OX=8355 GN=cimip2cb PE=2 SV=1
A4II40Ciliary microtubule inner protein 2C OS=Xenopus tropicalis OX=8364 GN=cimip2c PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003997 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10629
all species →		DUF2475Protein of unknown function (DUF2475)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR052329
all species →		FamilyCiliary Microtubule Inner Protein 2CInterproscan
IPR018902
all species →		DomainCiliary microtubule inner protein 2A-C-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR34924
all species →		UPF0573 PROTEIN C2ORF70Interproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap12.2641. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.2641.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap12.2641 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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