Gene detail

Detailed information of evm.model.Ap12.2644 in Astrangia poculata

Genomic Location: Ap12:27890160...27896140
NR annotation: XP_020620814.1, ATP-dependent DNA helicase Q1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.2644

atggaactttctaaagagctagacgtaattgacacagaactcaaggaaattgagacgcaaatcgaaaatttactcgaaagacagcaatgtcttcagtcaagaaaggagctgatacaatcacaaatttgcaatcgcttagacgcatgggagccttgttcttctgcacagaaaaaagaaaatggccaagattggtcggcaaacaatttctcctggtctgaaagagttgaaactgcgagggatgaaatcttcaagatcaaaaagtttcgccctcttcaactggagtgcataaatgcaacaatagcgggaagcgattgtattttgatcatgcccactggaggtggaaagagcttgtgctttcagctgccagcagtgatttcaaaaggggttacccttgttgtttcaccattgatttctttgatagaggaccagcttatggctctgaataaactcaatattaacagttctttcttaaattctaattgctccaaagacgaagtcaatgctgttcaccaggccatggttgacaagaagtctgagttgaaactgttgtatgtcacgcctgagaaaattgccaaaagcaagaggtttatggctaaactagagaaaacatttgaaggtggtagattgtcacaaatcgtaattgatgaagttcactgcacaagtcagtggggccatgacttccggcctgattacaaaatccttgggattctaaagcgtcagttcccaggggttcctatcctgggactcacagctacagcaacaacaaaagttgttgatgatgtcaagaagattcttggcctccaggaagactgtgtgctcttcaaagcatctttcaatagacctaacttgttctatgaggttcgacacaaaccatcaaagcatgacaagtgtatggatgaaattcagaaactgttgacacagaagttttctgggcagtcaggcattgtgtattgtttctctcggaaggactcagtaaccattgcctcaagtctaatggcgcgtggaattaaggcagcatgttaccatggtgatcttgatggccagtctcgcagtgaagtacatagagcctggacaagtaatgcgatacaagtggtggtagccacagtggcatttggaatgggtattgataagcctgatgtacgtttcgtaatacatcattccctgagcaaatctatggagaatttctatcaagaaagcgggcgtgcggggagagatgacaaagaatctcactgtattttgttctatcgaccatttgatgtctttcagcaaagtactatggtcttcacagaacaaacaggtttggagaatctatacggaatgttagcttactgccaagaacagaagacttgccggcgagctctgattggcagacattttggcgagtcctggaacccagctgaatgccatgaaatgtgtgacaactgcaaaaacactgctgaccaattagatggttcttctccttttgaaacccgtgacataacgaattactgccaagatgtcctcaagattctacagcaagcagcgtctctttcagaacgagttacggccattaaacttgtagacgcctggtgcggcaagggacaaacaaatctgcgcatgcgttacgtcaaggccccagatctttcgcgcgaagactgtgaacgagtgatagttaatttgttgttggaaggtgtgttgcgagaggattttcacttcactccttattcaaccataagctatcttttgcctggtcctaaggcgaagctggtacagaaagctggtaaaaaggtattcatggatttcaaagtggattctcgtttcaagaaggtcaaacagaagacaagcaagagatcactggattcaacaaacgtgacaggaaagaaaggtgcattgagcaagaaaaacacgatggagcctgacaaaaagagtaccagagagtcaatcgataattcggaaattgtcgacgatgactgtgaggacttcgtcagttgtgccaaacgcgcaaaactttcgacaacagctcacattgtcgaatcagatgaagacgacgaattaataattctagactaa

Transcript

evm.model.Ap12.2644

ATGGAACTTTCTAAAGAGCTAGACGTAATTGACACAGAACTCAAGGAAATTGAGACGCAAATCGAAAATTTACTCGAAAGACAGCAATGTCTTCAGTCAAGAAAGGAGCTGATACAATCACAAATTTGCAATCGCTTAGACGCATGGGAGCCTTGTTCTTCTGCACAGAAAAAAGAAAATGGCCAAGATTGGTCGGCAAACAATTTCTCCTGGTCTGAAAGAGTTGAAACTGCGAGGGATGAAATCTTCAAGATCAAAAAGTTTCGCCCTCTTCAACTGGAGTGCATAAATGCAACAATAGCGGGAAGCGATTGTATTTTGATCATGCCCACTGGAGGTGGAAAGAGCTTGTGCTTTCAGCTGCCAGCAGTGATTTCAAAAGGGGTTACCCTTGTTGTTTCACCATTGATTTCTTTGATAGAGGACCAGCTTATGGCTCTGAATAAACTCAATATTAACAGTTCTTTCTTAAATTCTAATTGCTCCAAAGACGAAGTCAATGCTGTTCACCAGGCCATGGTTGACAAGAAGTCTGAGTTGAAACTGTTGTATGTCACGCCTGAGAAAATTGCCAAAAGCAAGAGGTTTATGGCTAAACTAGAGAAAACATTTGAAGGTGGTAGATTGTCACAAATCGTAATTGATGAAGTTCACTGCACAAGTCAGTGGGGCCATGACTTCCGGCCTGATTACAAAATCCTTGGGATTCTAAAGCGTCAGTTCCCAGGGGTTCCTATCCTGGGACTCACAGCTACAGCAACAACAAAAGTTGTTGATGATGTCAAGAAGATTCTTGGCCTCCAGGAAGACTGTGTGCTCTTCAAAGCATCTTTCAATAGACCTAACTTGTTCTATGAGGTTCGACACAAACCATCAAAGCATGACAAGTGTATGGATGAAATTCAGAAACTGTTGACACAGAAGTTTTCTGGGCAGTCAGGCATTGTGTATTGTTTCTCTCGGAAGGACTCAGTAACCATTGCCTCAAGTCTAATGGCGCGTGGAATTAAGGCAGCATGTTACCATGGTGATCTTGATGGCCAGTCTCGCAGTGAAGTACATAGAGCCTGGACAAGTAATGCGATACAAGTGGTGGTAGCCACAGTGGCATTTGGAATGGGTATTGATAAGCCTGATGTACGTTTCGTAATACATCATTCCCTGAGCAAATCTATGGAGAATTTCTATCAAGAAAGCGGGCGTGCGGGGAGAGATGACAAAGAATCTCACTGTATTTTGTTCTATCGACCATTTGATGTCTTTCAGCAAAGTACTATGGTCTTCACAGAACAAACAGGTTTGGAGAATCTATACGGAATGTTAGCTTACTGCCAAGAACAGAAGACTTGCCGGCGAGCTCTGATTGGCAGACATTTTGGCGAGTCCTGGAACCCAGCTGAATGCCATGAAATGTGTGACAACTGCAAAAACACTGCTGACCAATTAGATGGTTCTTCTCCTTTTGAAACCCGTGACATAACGAATTACTGCCAAGATGTCCTCAAGATTCTACAGCAAGCAGCGTCTCTTTCAGAACGAGTTACGGCCATTAAACTTGTAGACGCCTGGTGCGGCAAGGGACAAACAAATCTGCGCATGCGTTACGTCAAGGCCCCAGATCTTTCGCGCGAAGACTGTGAACGAGTGATAGTTAATTTGTTGTTGGAAGGTGTGTTGCGAGAGGATTTTCACTTCACTCCTTATTCAACCATAAGCTATCTTTTGCCTGGTCCTAAGGCGAAGCTGGTACAGAAAGCTGGTAAAAAGGTATTCATGGATTTCAAAGTGGATTCTCGTTTCAAGAAGGTCAAACAGAAGACAAGCAAGAGATCACTGGATTCAACAAACGTGACAGGAAAGAAAGGTGCATTGAGCAAGAAAAACACGATGGAGCCTGACAAAAAGAGTACCAGAGAGTCAATCGATAATTCGGAAATTGTCGACGATGACTGTGAGGACTTCGTCAGTTGTGCCAAACGCGCAAAACTTTCGACAACAGCTCACATTGTCGAATCAGATGAAGACGACGAATTAATAATTCTAGACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6AYJ1	ATP-dependent DNA helicase Q1 OS=Rattus norvegicus OX=10116 GN=Recql PE=1 SV=1
Q9Z129	ATP-dependent DNA helicase Q1 OS=Mus musculus OX=10090 GN=Recql PE=1 SV=2
P46063	ATP-dependent DNA helicase Q1 OS=Homo sapiens OX=9606 GN=RECQL PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000285 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF16124 all species →	RecQ_Zn_bind	RecQ zinc-binding	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF09382 all species →	RQC	RQC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR032284 all species →	Domain	ATP-dependent DNA helicase RecQ, zinc-binding domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR002464 all species →	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR018982 all species →	Domain	RQC domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR004589 all species →	Family	DNA helicase, ATP-dependent, RecQ type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13710 all species →	DNA HELICASE RECQ FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0043138 all species →	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006268 all species →	Biological Process	DNA unwinding involved in DNA replication	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0009378 all species →	Molecular Function	four-way junction helicase activity	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10899	RECQL; ATP-dependent DNA helicase Q1	EC:5.6.2.4	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.