Gene detail

Detailed information of evm.model.Ap12.2670 in Astrangia poculata

Genomic Location: Ap12:28160782...28177967
NR annotation: XP_020620631.1, general transcription factor IIH subunit 1-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P32780	General transcription factor IIH subunit 1 OS=Homo sapiens OX=9606 GN=GTF2H1 PE=1 SV=1
Q9DBA9	General transcription factor IIH subunit 1 OS=Mus musculus OX=10090 GN=Gtf2h1 PE=1 SV=2
Q960E8	General transcription factor IIH subunit 1 OS=Drosophila melanogaster OX=7227 GN=Tfb1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004796 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03909 all species →	BSD	BSD domain	Domain	Interproscan
PF08567 all species →	PH_TFIIH	TFIIH p62 subunit, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035925 all species →	Homologous_superfamily	BSD domain superfamily	Interproscan
IPR005607 all species →	Domain	BSD domain	Interproscan
IPR027079 all species →	Family	TFIIH subunit Tfb1/GTF2H1	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR013876 all species →	Domain	TFIIH p62 subunit, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12856 all species →	TRANSCRIPTION INITIATION FACTOR IIH-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000439 all species →	Cellular Component	transcription factor TFIIH core complex	Interproscan
GO:0005675 all species →	Cellular Component	transcription factor TFIIH holo complex	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0006360 all species →	Biological Process	transcription by RNA polymerase I	Interproscan
GO:0006366 all species →	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0070816 all species →	Biological Process	obsolete phosphorylation of RNA polymerase II C-terminal domain	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03141	TFIIH1, GTF2H1, TFB1; transcription initiation factor TFIIH subunit 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.