Gene detail

Detailed information of evm.model.Ap12.27 in Astrangia poculata

Genomic Location: Ap12:193906...197328
NR annotation: MCG8046715.1, endonuclease/exonuclease/phosphatase family protein [Candidatus Thiodiazotropha taylori]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.27

atgatgatcgcgactttttttaaaaaagtctttaacaacttgtccaccttcgaatgtgaacacatagtgttaggcggagacttcaacctagtacaaaacattcaaaaagacaaaaagggaggaaaccaaaccactcactttaaatcactagaagaaattgaaatgtttaaagaagatatgggtctgactgacatttggcgcgatctacatccaagtacacagcgttttacgtggagaagaaacaaaccagaaattcactgccgattagacttttttttaatcagttcaagcctatcggccgatgcacttgaggcggatattctaccgggcttcaaaacagatcactccctaatcactttatcccttgccaccaagtcaaaccccagaggaccaggtttctggaagatgaatagccactttttaaaggatcttgaatatattaaccttatcaaagaaaccataaatgaagtgtccaatgattacaaagaggacgacacagttgacgcaatacttttatgggatgtgatgaaaatgcaaattagagcaaactcaattaaatatgcaaaacaacaaaaaacaaaacaaaaacaaactgagaaaaccctggagaccgaaattttaaagctagaactaaagctggaagataatatttccgatgatgaaaagtgtgaaattcgtacgaaacttgaaattaagaaacaaagcctagagcaagcgatcagctataaaacccaaggttctattattaggtccagaacacgctggtacaatgaaggagaaaaaaatacaaaatatttcttcggtttggaaaaaaggcattataacagtaaaacgataagaaatctgaaaatcaatgataacaccgtcctaaattcagatcaagaaattctgaatgaagcgaggcgcttttatcagacactttacacttcaaacaatagctctacacaggaaaccacttgtgaagacctattctttcgacaaaacaatgattgtaaaataagtgacgaagaaagaaaacgttgtgaaggtttgttaacggctgcagagtgtttggaaagtctaaaaactatggaatcaaacaagtcacctggaacggatggaatcccagctgaattctataaagtcttttggaatgacattaagtcctttttactcgcctccattaacgcttcctatgagaaaggcctcctttctatatcacaacggaggggtttaataactttaatcccaaaaaaagataaatctctgtgctatataaagaactggagacctatctcgctattgaactgcgattacaaaatcgctgcaaaatcagtcgctagtaggataaaaggagtcttgccttcggtgataaatagcgatcaaacaggcttccaaaaaaataggtttattggcgaaaatatcagactgctaaatagtatcttgagctatacagatatcgagaaactcccaggactccttctttttattgactttgagaaagcttttgacactcttgaatggacctttgttgaaaaaactctaaaatattacaacttcggaaattctcttgtttcttggattaaactcttttatactgacatcagtagctgcatacaaaacaacggttggacatccgatttctttaatttaagtagaggcgtgcgtcaaggctgccccctgtccccgtacctttttattttgtgtgctgaaattctgggggcggcaataaggcgagataaattaatccatggtattaaaatctcggagcaggagtgtaaagttagccaatatgatgatgatactacgctcatattggatggcacaaagccctcgctagaaaggtcctttctgctactggatatatttgccagaatgtcaggcctaaaggttaattatgacaaaacagaggcactctggataggatcttttaaagaccgaacggataagcttgcaataaagcaaaacatcaagtggacttttcgcaaggttaaatcccttggagtatggttttcaactagtgtagaagaagctgccatgcttaattaccaggaaaagaaagaaaaaatatctaaaatcctaaattgctggcaggttagaagatttactttgctaggcaaaataactgtcataaaaagtttagctgcatctcagcttgtctatatcatgtcacctttgccgtcctcgcaattatatctaaaagaaattcatcaaattttgtataattttctgtgggatggaagaggggataaaatcaaaaggagtgtgatgttaaacgaatacaaagacggtggtttaaaaatgttagatattcaatccttcaattgcgctttaaaagctaaatgggtacagaagtaccttgatgacagtaaccaggcaaaatggaaactattttttgactattttattaacgaacatgatggcaaattgcttctgactggtaatttaaacaaggctgacgtagccggtttaaatattcaagacatttttactaaagagataattgaaatttggtcgagcgtaaattacgaagaaacccaatcatcagacattggaaacacaccgatttggtacaactctcttataaggattgcaaaccaacccatcttttacagaacatggtcacgtgcgggcgtgaaccaagctaaagacattttagatcataagtcagacttcttaaagtatgaggactttaaatcccgctataaggttaaaaccacctttttaacgtactatggtgttgtgtccgctatgacaaaattgataaagccttttcaaaatcaggtcacgatgaattccaaccaacccacttgtggccaaaagctactatcagcatcaaatatttgcaaagaagcttacaagttaatcgttaaaaggatctcttcgacacctactaaaagccagacaaaatggataacagactgcggaaattacgcaaattcaataaaatgggataaatcctataatctgccctttttttgcactaaagaaacaaaacttcgaaccttccaatttaaattccttcacagaagaattgctactaacaattacctatataaaataggcatttcttcaacggactcctgtaccttctgtgaacaaaccacagaaactttgatccacctcttctgggaatgtgaatctgttcaactcttttggcaaaatgtacaatactggttgatacatcatcaggttaagccacaagatttctctctgaacctacctacctgtctgggaatagttgataacactgaggatttacttctacatcatgcacttctaattgccagatatcacatttactcatcaaaaataaagaaaactctaccgaatttacatatattttcgcaaaccttcttaaagtgtcaggaaatcgaaaaatgttttgcttataagacgaacgctgttaagaaatataactcaaaatggaaccgtttcaaataa

Transcript

evm.model.Ap12.27

ATGATGATCGCGACTTTTTTTAAAAAAGTCTTTAACAACTTGTCCACCTTCGAATGTGAACACATAGTGTTAGGCGGAGACTTCAACCTAGTACAAAACATTCAAAAAGACAAAAAGGGAGGAAACCAAACCACTCACTTTAAATCACTAGAAGAAATTGAAATGTTTAAAGAAGATATGGGTCTGACTGACATTTGGCGCGATCTACATCCAAGTACACAGCGTTTTACGTGGAGAAGAAACAAACCAGAAATTCACTGCCGATTAGACTTTTTTTTAATCAGTTCAAGCCTATCGGCCGATGCACTTGAGGCGGATATTCTACCGGGCTTCAAAACAGATCACTCCCTAATCACTTTATCCCTTGCCACCAAGTCAAACCCCAGAGGACCAGGTTTCTGGAAGATGAATAGCCACTTTTTAAAGGATCTTGAATATATTAACCTTATCAAAGAAACCATAAATGAAGTGTCCAATGATTACAAAGAGGACGACACAGTTGACGCAATACTTTTATGGGATGTGATGAAAATGCAAATTAGAGCAAACTCAATTAAATATGCAAAACAACAAAAAACAAAACAAAAACAAACTGAGAAAACCCTGGAGACCGAAATTTTAAAGCTAGAACTAAAGCTGGAAGATAATATTTCCGATGATGAAAAGTGTGAAATTCGTACGAAACTTGAAATTAAGAAACAAAGCCTAGAGCAAGCGATCAGCTATAAAACCCAAGGTTCTATTATTAGGTCCAGAACACGCTGGTACAATGAAGGAGAAAAAAATACAAAATATTTCTTCGGTTTGGAAAAAAGGCATTATAACAGTAAAACGATAAGAAATCTGAAAATCAATGATAACACCGTCCTAAATTCAGATCAAGAAATTCTGAATGAAGCGAGGCGCTTTTATCAGACACTTTACACTTCAAACAATAGCTCTACACAGGAAACCACTTGTGAAGACCTATTCTTTCGACAAAACAATGATTGTAAAATAAGTGACGAAGAAAGAAAACGTTGTGAAGGTTTGTTAACGGCTGCAGAGTGTTTGGAAAGTCTAAAAACTATGGAATCAAACAAGTCACCTGGAACGGATGGAATCCCAGCTGAATTCTATAAAGTCTTTTGGAATGACATTAAGTCCTTTTTACTCGCCTCCATTAACGCTTCCTATGAGAAAGGCCTCCTTTCTATATCACAACGGAGGGGTTTAATAACTTTAATCCCAAAAAAAGATAAATCTCTGTGCTATATAAAGAACTGGAGACCTATCTCGCTATTGAACTGCGATTACAAAATCGCTGCAAAATCAGTCGCTAGTAGGATAAAAGGAGTCTTGCCTTCGGTGATAAATAGCGATCAAACAGGCTTCCAAAAAAATAGGTTTATTGGCGAAAATATCAGACTGCTAAATAGTATCTTGAGCTATACAGATATCGAGAAACTCCCAGGACTCCTTCTTTTTATTGACTTTGAGAAAGCTTTTGACACTCTTGAATGGACCTTTGTTGAAAAAACTCTAAAATATTACAACTTCGGAAATTCTCTTGTTTCTTGGATTAAACTCTTTTATACTGACATCAGTAGCTGCATACAAAACAACGGTTGGACATCCGATTTCTTTAATTTAAGTAGAGGCGTGCGTCAAGGCTGCCCCCTGTCCCCGTACCTTTTTATTTTGTGTGCTGAAATTCTGGGGGCGGCAATAAGGCGAGATAAATTAATCCATGGTATTAAAATCTCGGAGCAGGAGTGTAAAGTTAGCCAATATGATGATGATACTACGCTCATATTGGATGGCACAAAGCCCTCGCTAGAAAGGTCCTTTCTGCTACTGGATATATTTGCCAGAATGTCAGGCCTAAAGGTTAATTATGACAAAACAGAGGCACTCTGGATAGGATCTTTTAAAGACCGAACGGATAAGCTTGCAATAAAGCAAAACATCAAGTGGACTTTTCGCAAGGTTAAATCCCTTGGAGTATGGTTTTCAACTAGTGTAGAAGAAGCTGCCATGCTTAATTACCAGGAAAAGAAAGAAAAAATATCTAAAATCCTAAATTGCTGGCAGGTTAGAAGATTTACTTTGCTAGGCAAAATAACTGTCATAAAAAGTTTAGCTGCATCTCAGCTTGTCTATATCATGTCACCTTTGCCGTCCTCGCAATTATATCTAAAAGAAATTCATCAAATTTTGTATAATTTTCTGTGGGATGGAAGAGGGGATAAAATCAAAAGGAGTGTGATGTTAAACGAATACAAAGACGGTGGTTTAAAAATGTTAGATATTCAATCCTTCAATTGCGCTTTAAAAGCTAAATGGGTACAGAAGTACCTTGATGACAGTAACCAGGCAAAATGGAAACTATTTTTTGACTATTTTATTAACGAACATGATGGCAAATTGCTTCTGACTGGTAATTTAAACAAGGCTGACGTAGCCGGTTTAAATATTCAAGACATTTTTACTAAAGAGATAATTGAAATTTGGTCGAGCGTAAATTACGAAGAAACCCAATCATCAGACATTGGAAACACACCGATTTGGTACAACTCTCTTATAAGGATTGCAAACCAACCCATCTTTTACAGAACATGGTCACGTGCGGGCGTGAACCAAGCTAAAGACATTTTAGATCATAAGTCAGACTTCTTAAAGTATGAGGACTTTAAATCCCGCTATAAGGTTAAAACCACCTTTTTAACGTACTATGGTGTTGTGTCCGCTATGACAAAATTGATAAAGCCTTTTCAAAATCAGGTCACGATGAATTCCAACCAACCCACTTGTGGCCAAAAGCTACTATCAGCATCAAATATTTGCAAAGAAGCTTACAAGTTAATCGTTAAAAGGATCTCTTCGACACCTACTAAAAGCCAGACAAAATGGATAACAGACTGCGGAAATTACGCAAATTCAATAAAATGGGATAAATCCTATAATCTGCCCTTTTTTTGCACTAAAGAAACAAAACTTCGAACCTTCCAATTTAAATTCCTTCACAGAAGAATTGCTACTAACAATTACCTATATAAAATAGGCATTTCTTCAACGGACTCCTGTACCTTCTGTGAACAAACCACAGAAACTTTGATCCACCTCTTCTGGGAATGTGAATCTGTTCAACTCTTTTGGCAAAATGTACAATACTGGTTGATACATCATCAGGTTAAGCCACAAGATTTCTCTCTGAACCTACCTACCTGTCTGGGAATAGTTGATAACACTGAGGATTTACTTCTACATCATGCACTTCTAATTGCCAGATATCACATTTACTCATCAAAAATAAAGAAAACTCTACCGAATTTACATATATTTTCGCAAACCTTCTTAAAGTGTCAGGAAATCGAAAAATGTTTTGCTTATAAGACGAACGCTGTTAAGAAATATAACTCAAAATGGAACCGTTTCAAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q03274	Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1
P92555	Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000039 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13966 all species →	zf-RVT	zinc-binding in reverse transcriptase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR026960 all species →	Domain	Reverse transcriptase zinc-binding domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31635 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.Ap12.27. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap12.27.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.