Detailed information of evm.model.Ap12.302 in Astrangia poculata

Genomic Location: Ap12:2848074...2852420
NR annotation: CAH3038759.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8NFF2Sodium/potassium/calcium exchanger 4 OS=Homo sapiens OX=9606 GN=SLC24A4 PE=1 SV=2
Q8CGQ8Sodium/potassium/calcium exchanger 4 OS=Mus musculus OX=10090 GN=Slc24a4 PE=1 SV=2
Q9EPQ0Sodium/potassium/calcium exchanger 3 (Fragment) OS=Rattus norvegicus OX=10116 GN=Slc24a3 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000757 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01699
all species →		Na_Ca_exSodium/calcium exchanger proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR044880
all species →		Homologous_superfamilyNCX, central ion-binding domain superfamilyInterproscan
IPR004481
all species →		FamilySodium/potassium/calcium exchangerInterproscan
IPR004837
all species →		DomainSodium/calcium exchanger membrane regionInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10846
all species →		SODIUM/POTASSIUM/CALCIUM EXCHANGERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0055085
all species →		Biological Processtransmembrane transportInterproscan
GO:0005262
all species →		Molecular Functioncalcium channel activityInterproscan
GO:0005887
all species →		Cellular Componentplasma membraneInterproscan
GO:0006874
all species →		Biological Processintracellular calcium ion homeostasisInterproscan
GO:0008273
all species →		Molecular Functioncalcium, potassium:sodium antiporter activityInterproscan
GO:0070588
all species →		Biological Processcalcium ion transmembrane transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K13752SLC24A4, NCKX4; solute carrier family 24 (sodium/potassium/calcium exchanger), member 4-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap12.302 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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