Detailed information of evm.model.Ap12.340 in Astrangia poculata

Genomic Location: Ap12:3240528...3259285
NR annotation: XP_022806185.1, NACHT, LRR and PYD domains-containing protein 12-like [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P59046NACHT, LRR and PYD domains-containing protein 12 OS=Homo sapiens OX=9606 GN=NLRP12 PE=1 SV=2
Q96MN2NACHT, LRR and PYD domains-containing protein 4 OS=Homo sapiens OX=9606 GN=NLRP4 PE=1 SV=3
Q7RTR2NLR family CARD domain-containing protein 3 OS=Homo sapiens OX=9606 GN=NLRC3 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005586 (this species only)
Ubiquitin familyUBD|Other|SH3 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05729
all species →		NACHTNACHT domainDomainInterproscan
PF13516
all species →		LRR_6Leucine Rich repeatRepeatInterproscan
PF08397
all species →		IMDIRSp53/MIM homology domainFamilyInterproscan
PF00018
all species →		SH3_1SH3 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001452
all species →		DomainSH3 domainInterproscan
IPR036028
all species →		Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR007111
all species →		DomainNACHT nucleoside triphosphataseInterproscan
IPR001611
all species →		RepeatLeucine-rich repeatInterproscan
IPR013606
all species →		DomainIMD/I-BAR domainInterproscan
IPR051261
all species →		FamilyNOD-like receptor (NLR)Interproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR032675
all species →		Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR027267
all species →		Homologous_superfamilyAH/BAR domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24106
all species →		NACHT, LRR AND CARD DOMAINS-CONTAININGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0007009
all species →		Biological Processplasma membrane organizationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.340.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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