Gene detail

Detailed information of evm.model.Ap12.365 in Astrangia poculata

Genomic Location: Ap12:3437160...3454650
NR annotation: KAJ7340350.1, cop9 signalosome complex subunit [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.365

atgacaggaaagaagttggctgtattcattttgctgattgtttcaatggagttgctgttttgtaccgttgatgcatggcgccgtcggcgacgccgccgacgatatatacctccagcgccagcgacaacaaccaaggcgccaacaacattaccacccaccactccttcctgcgactcatcgattccgcagcccaccaatgctcccgccgatttcaaatggaacaacaagtggcatcagtcattctatgcttattgtccaaacagctattcattgagtcagtggttcgctcacttccgacactgccaagaagaccgaattcatcatatgcgatgccggcttgggcccgctattttcgacgaaaccaactgcaattggactccacattatttgaatgacgtccgacatgcgttcttctacaagtgtcccaaccaaggattcatcaatggagtaataagccagtttgataaaacctccaaagatcgcagactcggtgtccgttgttgccatgtgaatggctaccagcacgaaaactgcaagaccacgccatggataaacctgtttggtggactgctgaactaccaagttcctcaggggtataccttagttggcgtaggaagctatcactcagtggcagagcctttggcaaactttagtgatcggcgctggaagttcgagatttgtgaggccatcactgaagccaagcagaatccaatagagcccatgcaggttgatatacctgaaagtgataattcccctcgtgaagatgactttaccattgagtccgcaactttggatcttgatgtttatgcttcaaactacaccagcctgacgaagctgaacaggttgatgtttgttgccaaacattgtccatccctagaggtggatgccttgaggatagctcttagttatgtaaaacagacatttaatgttcagctgtatcaggaaattgtaacaaggatgactgaagcatgtagtcgcagtgaactggaatgcccaccaatcgacacaacatggatagaaactacaagtaaaaaggctgctttaaagcttgagaaactcgatacagacctgaaaaactacaaaagtaactccatcaaggaaagcatcagacgaggacatgatgacttgggggatcattactttgagtgcggagacctaaacaatgctttaaagtgctactcaagagcaagagattactgtaccacagctaaacatgttgttaatatgtgtgttaatgttatcaaggtcagtattcacttgggtaactggtcgcatgtattgaattatgtcaacaaggcagaaaacacttcagaacttgctgagcagaaagacagaaggccaaacttggtgacacttacaagactcaaatgtgctgcaggtcttgcagaacttgctgccaggaagtacaagtcagctgccagaaatttcttacaagcttcgtttgacaactgtgaatgccctgagattatatcgcccaataacgttgctgtgtatgggggactgtgtgctttggcttcctttgacagacaggagctgcaaaagaaggttttatcaagcagttcctttaagcttttcttggagttggagccacagctaagagatgtgttgcacaagttccacgagtcacaatatgccgcttgtctgaaacttctagatgaaatgaaggataacttcatgttagacatgtatctgtcaccccatgtgaacaccttgtacagtcagatccgaaacagggccctggtacagtacttcagtccgtatgtgtcagcggacatggagaagatggcgcatgcgttcaacacaacagtgtcaaacctggaagatgagctgtcacagctgatacttgatggacagatacaggccaggatcgactcacacaacaaggtactgttcgcccgaaacgttgatcagagaagtgtcacattcgaaaaagcaatagagatgggaaaagaatatcacaaaaggacgaaggcgttgattctccggggcgccatccttcgtaaccagatcgttgttaaaagccccccacgagagcctagttctggtgatgtttccatgccagttaccagatag

Transcript

evm.model.Ap12.365

ATGACAGGAAAGAAGTTGGCTGTATTCATTTTGCTGATTGTTTCAATGGAGTTGCTGTTTTGTACCGTTGATGCATGGCGCCGTCGGCGACGCCGCCGACGATATATACCTCCAGCGCCAGCGACAACAACCAAGGCGCCAACAACATTACCACCCACCACTCCTTCCTGCGACTCATCGATTCCGCAGCCCACCAATGCTCCCGCCGATTTCAAATGGAACAACAAGTGGCATCAGTCATTCTATGCTTATTGTCCAAACAGCTATTCATTGAGTCAGTGGTTCGCTCACTTCCGACACTGCCAAGAAGACCGAATTCATCATATGCGATGCCGGCTTGGGCCCGCTATTTTCGACGAAACCAACTGCAATTGGACTCCACATTATTTGAATGACGTCCGACATGCGTTCTTCTACAAGTGTCCCAACCAAGGATTCATCAATGGAGTAATAAGCCAGTTTGATAAAACCTCCAAAGATCGCAGACTCGGTGTCCGTTGTTGCCATGTGAATGGCTACCAGCACGAAAACTGCAAGACCACGCCATGGATAAACCTGTTTGGTGGACTGCTGAACTACCAAGTTCCTCAGGGGTATACCTTAGTTGGCGTAGGAAGCTATCACTCAGTGGCAGAGCCTTTGGCAAACTTTAGTGATCGGCGCTGGAAGTTCGAGATTTGTGAGGCCATCACTGAAGCCAAGCAGAATCCAATAGAGCCCATGCAGGTTGATATACCTGAAAGTGATAATTCCCCTCGTGAAGATGACTTTACCATTGAGTCCGCAACTTTGGATCTTGATGTTTATGCTTCAAACTACACCAGCCTGACGAAGCTGAACAGGTTGATGTTTGTTGCCAAACATTGTCCATCCCTAGAGGTGGATGCCTTGAGGATAGCTCTTAGTTATGTAAAACAGACATTTAATGTTCAGCTGTATCAGGAAATTGTAACAAGGATGACTGAAGCATGTAGTCGCAGTGAACTGGAATGCCCACCAATCGACACAACATGGATAGAAACTACAAGTAAAAAGGCTGCTTTAAAGCTTGAGAAACTCGATACAGACCTGAAAAACTACAAAAGTAACTCCATCAAGGAAAGCATCAGACGAGGACATGATGACTTGGGGGATCATTACTTTGAGTGCGGAGACCTAAACAATGCTTTAAAGTGCTACTCAAGAGCAAGAGATTACTGTACCACAGCTAAACATGTTGTTAATATGTGTGTTAATGTTATCAAGGTCAGTATTCACTTGGGTAACTGGTCGCATGTATTGAATTATGTCAACAAGGCAGAAAACACTTCAGAACTTGCTGAGCAGAAAGACAGAAGGCCAAACTTGGTGACACTTACAAGACTCAAATGTGCTGCAGGTCTTGCAGAACTTGCTGCCAGGAAGTACAAGTCAGCTGCCAGAAATTTCTTACAAGCTTCGTTTGACAACTGTGAATGCCCTGAGATTATATCGCCCAATAACGTTGCTGTGTATGGGGGACTGTGTGCTTTGGCTTCCTTTGACAGACAGGAGCTGCAAAAGAAGGTTTTATCAAGCAGTTCCTTTAAGCTTTTCTTGGAGTTGGAGCCACAGCTAAGAGATGTGTTGCACAAGTTCCACGAGTCACAATATGCCGCTTGTCTGAAACTTCTAGATGAAATGAAGGATAACTTCATGTTAGACATGTATCTGTCACCCCATGTGAACACCTTGTACAGTCAGATCCGAAACAGGGCCCTGGTACAGTACTTCAGTCCGTATGTGTCAGCGGACATGGAGAAGATGGCGCATGCGTTCAACACAACAGTGTCAAACCTGGAAGATGAGCTGTCACAGCTGATACTTGATGGACAGATACAGGCCAGGATCGACTCACACAACAAGGTACTGTTCGCCCGAAACGTTGATCAGAGAAGTGTCACATTCGAAAAAGCAATAGAGATGGGAAAAGAATATCACAAAAGGACGAAGGCGTTGATTCTCCGGGGCGCCATCCTTCGTAACCAGATCGTTGTTAAAAGCCCCCCACGAGAGCCTAGTTCTGGTGATGTTTCCATGCCAGTTACCAGATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NRT5	COP9 signalosome complex subunit 1 OS=Xenopus laevis OX=8355 GN=csn1 PE=2 SV=1
Q99LD4	COP9 signalosome complex subunit 1 OS=Mus musculus OX=10090 GN=Gps1 PE=1 SV=1
P97834	COP9 signalosome complex subunit 1 OS=Rattus norvegicus OX=10116 GN=Gps1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005173 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21151 all species →	CSN1_C	COP9 signalosome complex subunit 1, C-terminal helix	Domain	Interproscan
PF10602 all species →	RPN7	26S proteasome subunit RPN7	Repeat	Interproscan
PF14704 all species →	DERM	Dermatopontin	Family	Interproscan
PF01399 all species →	PCI	PCI domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR019585 all species →	Family	26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1	Interproscan
IPR048624 all species →	Domain	COP9 signalosome complex subunit 1, C-terminal helix	Interproscan
IPR045135 all species →	Domain	26S proteasome regulatory subunit Rpn7, N-terminal	Interproscan
IPR026645 all species →	Family	Dermatopontin	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14145 all species →	26S PROTESOME SUBUNIT 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008180 all species →	Cellular Component	COP9 signalosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap12.365.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.