Detailed information of evm.model.Ap12.452 in Astrangia poculata

Genomic Location: Ap12:4509931...4533840
NR annotation: XP_020611300.1, uncharacterized protein LOC110049813 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9QZZ4Unconventional myosin-XV OS=Mus musculus OX=10090 GN=Myo15a PE=1 SV=2
Q9UKN7Unconventional myosin-XV OS=Homo sapiens OX=9606 GN=MYO15A PE=1 SV=2
Q96JP2Unconventional myosin-XVB OS=Homo sapiens OX=9606 GN=MYO15B PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003115 (this species only) · gene tree & orthology
Ubiquitin familyUBD|Other|SH3 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00784
all species →		MyTH4MyTH4 domainFamilyInterproscan
PF07653
all species →		SH3_2Variant SH3 domainDomainInterproscan
PF00373
all species →		FERM_MFERM central domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051567
all species →		FamilyUnconventional Myosin ATPaseInterproscan
IPR000857
all species →		DomainMyTH4 domainInterproscan
IPR019748
all species →		DomainFERM central domainInterproscan
IPR038185
all species →		Homologous_superfamilyMyTH4 domain superfamilyInterproscan
IPR036028
all species →		Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR035963
all species →		Homologous_superfamilyFERM superfamily, second domainInterproscan
IPR001452
all species →		DomainSH3 domainInterproscan
IPR000299
all species →		DomainFERM domainInterproscan
IPR019749
all species →		DomainBand 4.1 domainInterproscan
IPR011993
all species →		Homologous_superfamilyPH-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22692
all species →		MYOSIN VII, XVInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005856
all species →		Cellular ComponentcytoskeletonInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.452.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap12.452 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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