Gene detail

Detailed information of evm.model.Ap12.500 in Astrangia poculata

Genomic Location: Ap12:5161992...5188134
NR annotation: XP_020629198.1, uncharacterized protein LOC110066318 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.500

atggagaacttgcagaaggctattcatggaagtaaaaccactgcagaagtgaaagagcagaacagaagggaaaagcaacatgagttaggagtgtgtcggatcagaaggagcgaaggagatactcttggttctggattcgtggttaagcaactgcagattattccaggttttcctcgcgattactgtctcatatcaagcgataaagtctttcccaaggatgaattaaacataaaaagttactacttggactttaggaagctggactcaactaagttgaaaacgatcaaattagaggacatcgcttccgagtcaaccgacatccttcgaacttccggcttagttgtaattcccatcgacccttccaagaaatgtaccaaaaaagaaagtatctttacttatcgaccatttaaagttgccaacgaaggaatcaaacctgttgatgacttatgttgccattacgtaaacgatttgtcgacgaagttatttgatgtgaaatggctgaaagtgcaacaagcagacgttccagggcagtacgaacttcatgaaggtcttgaaactccttacaaaacttatgctgaagttactcataaaggggatcgtaagccctatggtgccgtcatcttaaagcgtagtaacaacgaatttatggttgctggagcccttacttttacagatgacgaatgcaagaacatatctcctgtgtttttcccactacctttaccaccacctcaaggtcctcaagcagctttgaatataaagattgatgtggaaaccatgaaactcacagaacacaacacacaggatagaacccctgtttcaagaatggattcaggaagatctgctgatggtaggcaccaagaggcatcttcagtacctgggtcatcagcacatactcagccttcatgtacaggggctgaagctctccaagcacccaatcgcattccaacagaaggagaagtcttgcgtttaattgctttaaactacctgcagactacaccaccaaggtgcaaggatgaccatgatcatttttatgtatacatggaaaaaatgaaatgccttattacaggtgttagtgtaggaagtttgctgataaccgtgaagtgtgattcactccagatcctggagggactgtgggaagattattcatctggcaatcttgatgaagtggttcaaagatgtttcgtgacagaagagattttgagggaatttagtcttgcagagttgaagcttaaaacaacaatcttggaagaggagtataaagcatgcaaagtttactttgagaaaaatacagcaagaggtcaattatgtgaaattgtagctgcatcagacgttacagaaaaaccaggccatttcactgatgaaaagatttcaacagaaacagataacaaagaaacagataacaaagaggatttaccaacagaaacagatggtgaaaacacgaaatttaaacccgtggaggacgactcagtatcggccgatgaagataaatgtgaaagtgtagctgtaccagaagaagaaccagttaattttgttagagaagagattttaaaagaagtagatgacaactatgatttagaagagatattgaaagttttcatcaagaacaaagggagaagaacaagggagacgaacctggaggaacaaagttggccagaccaggtgcatcgtatagtttatgcaggattagagatgtttgacgtcagttcacctaaaggactacaagactatttgatctacttttatgactggatgtacagtgaaggtcttcgacttcttcgcgggtataattcctccagggagactccaggagaatgtgaagcagccctcagcactggtagtgatctccaaggagatgaaaaagaggcaagcactgtcttagtgcagaagactgcaaagccaggcaaagagtctccctccgtgaagaatttaacaaaagttatggatgatgacttggaacaatttgtttctattcatgtcaaggaaggtgcatggcaagtagtggtgtgggtttttgatgagctgcttcatcgtggagtaccatcaagcataatatcagcagctaagagagaaggctgggagactaatgatgatgcagagagcgatgattcgcagttagtagcattgacttggtggccaacaaatgaggaccaagagttagtaacattgtgtaaagtactgactgagagtgactgtaaactgatcagcttaaacctcagtttcaatttcaaaatcacagatgcaggagtaaatcacttggctgaagcactcatgcatagtaattgtaaattaaacaacctagatctcagttgcaatcaagcaatgacagatgcaggggtaaagcacttggctgaagcactcatgcatactaactgtaatttaaacagcttagacctcagtgacaataatgatgcaataacagatgcagcagtaaagcacttggctgaagcactcatgcatagtaactgttcattaaacagccttgacctccgtcacaataagcaaataacagatgcaggagtaaagcacttggctgaagcactcatgcatagtaactgttcattaaacagcttaaacctcagtgacaatgatgcaataacagatgccggagtaaagcacttggctgaagcactcatgcatagtaactgttcattaaacagcttaaacctcagtgacaatgatgcaataacagatgccggagtaaagcacttggctgaagcactcatgcatagtaactgttcatttaacagcctaaacctcagtttgaatgatgcaataacagatgcaggagtaaagcacttagctgaagcactcatgcatagtaatcgtaaattaaacagcctaaacctcagttggaataggaacataacagatgcaggagtaaagcacttggctgaagcactcatgcatagtaactgttcattaaacagccttgacctcagttggaatgatgcaataacagatgccggagtaaagcacttggctgaagcactcatgcatagtaactgttcattaaacagcctaaacctcagtttgaatgatgcaataacagatgcaggagtaaagcacttagctgaagcactcatgcatagtaatcgtaaattaaacagcctaaacctcagttggaataggaacataacagatgcaggagtaaagcacttggctgaagcactcatgcatagtaattgtaaattaaaaaggttaaacctcagtggcaataagaaaaaaacagatgcaggagtagagcacttggctgaagcactcgtgcatagtaactgttcattaaacagccttgacctcagttggaatgatgcaataacagatgccggagtaaagcacttggctgaagcactcatgcatagtaactgttcattaaacagcttaaacctcagtgacaattacagaataacggatgcaggagtaaagcacttggcggaagcactcatgcatagtaattacgaactaggtagcagaaactatgctgacatcatagtaacagctaaagttaaagagcacgtgtctgaggaaggtttgggttga

Transcript

evm.model.Ap12.500

ATGGAGAACTTGCAGAAGGCTATTCATGGAAGTAAAACCACTGCAGAAGTGAAAGAGCAGAACAGAAGGGAAAAGCAACATGAGTTAGGAGTGTGTCGGATCAGAAGGAGCGAAGGAGATACTCTTGGTTCTGGATTCGTGGTTAAGCAACTGCAGATTATTCCAGGTTTTCCTCGCGATTACTGTCTCATATCAAGCGATAAAGTCTTTCCCAAGGATGAATTAAACATAAAAAGTTACTACTTGGACTTTAGGAAGCTGGACTCAACTAAGTTGAAAACGATCAAATTAGAGGACATCGCTTCCGAGTCAACCGACATCCTTCGAACTTCCGGCTTAGTTGTAATTCCCATCGACCCTTCCAAGAAATGTACCAAAAAAGAAAGTATCTTTACTTATCGACCATTTAAAGTTGCCAACGAAGGAATCAAACCTGTTGATGACTTATGTTGCCATTACGTAAACGATTTGTCGACGAAGTTATTTGATGTGAAATGGCTGAAAGTGCAACAAGCAGACGTTCCAGGGCAGTACGAACTTCATGAAGGTCTTGAAACTCCTTACAAAACTTATGCTGAAGTTACTCATAAAGGGGATCGTAAGCCCTATGGTGCCGTCATCTTAAAGCGTAGTAACAACGAATTTATGGTTGCTGGAGCCCTTACTTTTACAGATGACGAATGCAAGAACATATCTCCTGTGTTTTTCCCACTACCTTTACCACCACCTCAAGGTCCTCAAGCAGCTTTGAATATAAAGATTGATGTGGAAACCATGAAACTCACAGAACACAACACACAGGATAGAACCCCTGTTTCAAGAATGGATTCAGGAAGATCTGCTGATGGTAGGCACCAAGAGGCATCTTCAGTACCTGGGTCATCAGCACATACTCAGCCTTCATGTACAGGGGCTGAAGCTCTCCAAGCACCCAATCGCATTCCAACAGAAGGAGAAGTCTTGCGTTTAATTGCTTTAAACTACCTGCAGACTACACCACCAAGGTGCAAGGATGACCATGATCATTTTTATGTATACATGGAAAAAATGAAATGCCTTATTACAGGTGTTAGTGTAGGAAGTTTGCTGATAACCGTGAAGTGTGATTCACTCCAGATCCTGGAGGGACTGTGGGAAGATTATTCATCTGGCAATCTTGATGAAGTGGTTCAAAGATGTTTCGTGACAGAAGAGATTTTGAGGGAATTTAGTCTTGCAGAGTTGAAGCTTAAAACAACAATCTTGGAAGAGGAGTATAAAGCATGCAAAGTTTACTTTGAGAAAAATACAGCAAGAGGTCAATTATGTGAAATTGTAGCTGCATCAGACGTTACAGAAAAACCAGGCCATTTCACTGATGAAAAGATTTCAACAGAAACAGATAACAAAGAAACAGATAACAAAGAGGATTTACCAACAGAAACAGATGGTGAAAACACGAAATTTAAACCCGTGGAGGACGACTCAGTATCGGCCGATGAAGATAAATGTGAAAGTGTAGCTGTACCAGAAGAAGAACCAGTTAATTTTGTTAGAGAAGAGATTTTAAAAGAAGTAGATGACAACTATGATTTAGAAGAGATATTGAAAGTTTTCATCAAGAACAAAGGGAGAAGAACAAGGGAGACGAACCTGGAGGAACAAAGTTGGCCAGACCAGGTGCATCGTATAGTTTATGCAGGATTAGAGATGTTTGACGTCAGTTCACCTAAAGGACTACAAGACTATTTGATCTACTTTTATGACTGGATGTACAGTGAAGGTCTTCGACTTCTTCGCGGGTATAATTCCTCCAGGGAGACTCCAGGAGAATGTGAAGCAGCCCTCAGCACTGGTAGTGATCTCCAAGGAGATGAAAAAGAGGCAAGCACTGTCTTAGTGCAGAAGACTGCAAAGCCAGGCAAAGAGTCTCCCTCCGTGAAGAATTTAACAAAAGTTATGGATGATGACTTGGAACAATTTGTTTCTATTCATGTCAAGGAAGGTGCATGGCAAGTAGTGGTGTGGGTTTTTGATGAGCTGCTTCATCGTGGAGTACCATCAAGCATAATATCAGCAGCTAAGAGAGAAGGCTGGGAGACTAATGATGATGCAGAGAGCGATGATTCGCAGTTAGTAGCATTGACTTGGTGGCCAACAAATGAGGACCAAGAGTTAGTAACATTGTGTAAAGTACTGACTGAGAGTGACTGTAAACTGATCAGCTTAAACCTCAGTTTCAATTTCAAAATCACAGATGCAGGAGTAAATCACTTGGCTGAAGCACTCATGCATAGTAATTGTAAATTAAACAACCTAGATCTCAGTTGCAATCAAGCAATGACAGATGCAGGGGTAAAGCACTTGGCTGAAGCACTCATGCATACTAACTGTAATTTAAACAGCTTAGACCTCAGTGACAATAATGATGCAATAACAGATGCAGCAGTAAAGCACTTGGCTGAAGCACTCATGCATAGTAACTGTTCATTAAACAGCCTTGACCTCCGTCACAATAAGCAAATAACAGATGCAGGAGTAAAGCACTTGGCTGAAGCACTCATGCATAGTAACTGTTCATTAAACAGCTTAAACCTCAGTGACAATGATGCAATAACAGATGCCGGAGTAAAGCACTTGGCTGAAGCACTCATGCATAGTAACTGTTCATTAAACAGCTTAAACCTCAGTGACAATGATGCAATAACAGATGCCGGAGTAAAGCACTTGGCTGAAGCACTCATGCATAGTAACTGTTCATTTAACAGCCTAAACCTCAGTTTGAATGATGCAATAACAGATGCAGGAGTAAAGCACTTAGCTGAAGCACTCATGCATAGTAATCGTAAATTAAACAGCCTAAACCTCAGTTGGAATAGGAACATAACAGATGCAGGAGTAAAGCACTTGGCTGAAGCACTCATGCATAGTAACTGTTCATTAAACAGCCTTGACCTCAGTTGGAATGATGCAATAACAGATGCCGGAGTAAAGCACTTGGCTGAAGCACTCATGCATAGTAACTGTTCATTAAACAGCCTAAACCTCAGTTTGAATGATGCAATAACAGATGCAGGAGTAAAGCACTTAGCTGAAGCACTCATGCATAGTAATCGTAAATTAAACAGCCTAAACCTCAGTTGGAATAGGAACATAACAGATGCAGGAGTAAAGCACTTGGCTGAAGCACTCATGCATAGTAATTGTAAATTAAAAAGGTTAAACCTCAGTGGCAATAAGAAAAAAACAGATGCAGGAGTAGAGCACTTGGCTGAAGCACTCGTGCATAGTAACTGTTCATTAAACAGCCTTGACCTCAGTTGGAATGATGCAATAACAGATGCCGGAGTAAAGCACTTGGCTGAAGCACTCATGCATAGTAACTGTTCATTAAACAGCTTAAACCTCAGTGACAATTACAGAATAACGGATGCAGGAGTAAAGCACTTGGCGGAAGCACTCATGCATAGTAATTACGAACTAGGTAGCAGAAACTATGCTGACATCATAGTAACAGCTAAAGTTAAAGAGCACGTGTCTGAGGAAGGTTTGGGTTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011225 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF20694 all species →	TRADD-like_N	TRADD-like N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051261 all species →	Family	NOD-like receptor (NLR)	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR049341 all species →	Domain	TRADD-like N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24106 all species →	NACHT, LRR AND CARD DOMAINS-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap12.500.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.