Gene detail

Detailed information of evm.model.Ap12.502 in Astrangia poculata

Genomic Location: Ap12:5210506...5226896
NR annotation: XP_020611387.1, uncharacterized protein LOC110049886 isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.502

atgaaaccagcagaacacaacacgcaggacagaactcctgtttcaggaatagattcaggtggatctcttgatggttggcaccgggaagcatctgaagcacatgtgtcatcaggagatacccagcctttgtccactgggcctgaagctctccaaacacttactgtcattccgacagcagaggaactctttcgttcaattgtttcaaatttctggcagactacacaaccaaggagcatggatgaccattataatttcttggcatatgcgaaagaaatgcgactcgttatcacaggtgttaatgtaggaagtttggtgataactgtaaagtttgattcactccagagcctggagggactgtggaaagattattcatctggccatcttggtgaagtggttcaaagatgtttcgtgacagaagagatcttgagggaatttagcctcgcagagttaaagcttaaaacaacaatcttggaagaggagtataaagtatgcaaagtgtactttgagaaaaatccagcaagagatcaatgtgaaagtatagcagtacctgaaggaaatcaaggccatttcactgatgaaaagattttaatggaaacagataacaaagatgatttaccaacagaagaaacagatgatgaaaaactgaaaactgaagctgacgaggacgtatcagatgatgaagatcaatgtgaaagtgtggctgtactcggggaaaaggcaacccattctactaaagaaaagatgttaacaggaactgaaggtgattcgccaacacaaacagatgaagaagattctttaatatcagacgatgaaggtcaaaatgaaagtgtagctgacatacaacttctaacaacacacttctctcttctggatgtcagaaaaccttcaagagaaagtcgtgattcaggattttcatcttcgtcttcccgcactagttcttcttctactagttttcctcacactagttccaagcgtgaagccccacatctgaaaataaggagtcacagaatgcaacagatagttagagagggattgcagatgtttgacatcaattcacctgaagaacttcaagactatgtgacctacttaactaacaagatgttcagtgcaggcaaagactctccctccgtgaagaatttaacagaatttatggatgattttgaattgaaacaatttgtttctattcatgtcaaggaagataaatggcaagtagtagtgtgggttttgaatgagctgcttcgtcgtaaaggagtactatcgagaataatatcagcagctcagaaagaaggctgggagactaaggaggataaggaaagcgatgattcgcagtcagtagcattaacctggtggccaacaaatgaggaccaagagttagtaacattgtgtaaagtactgactgagagcaatcttagagtgaacagcccagacctcagttgcaatacgagagatgcaggagtaaagcacttggctgaagcactcatgcatagtaactgttcattaaacagccttgacctcagatggaatgatgcaataacagatgcaggagtaaagcacttggctgaagcactcatgcatagtaactgttcattaaacagcctaaacctcagtcacaataagcaaataactgatgcaggagtaaagcacttggctgaagcactcatgcatagtaactgttcattaaacagccttgacctcagatggaatgatgcaataacagatgcaggagtaaagcacttggctgaagcactcatgcatagtaactgttcattaaacagcctaaacctcagtggcaattatgcaataacagatgcaggagtaaagcacttggctgaagcgctcatgcatagtaactgttcattaaacagcctagacctcagtttcaataatgcaataacagatgcaggagtaaagcacttggctgaagcactcatgcatagtaactgttcattaaacagccttgacctcagtagcaatgatgcaataacagatgtaggagtaaagcacttggctgaagcactcatgcatagtaactgttcattaaacagcctagacctcagtttcaataatgcaataacagatgtaggagtaaagcacttggctgaagcactcatgcatagtaactgttcattaaacagcctagacctcagtttcaataatgcaataacagatgctggagtaaagcacttggctgaagcactcatgcatagtaactgttcattaaacagccttgacctcagttggaatgatgcaataacagatgcaggagtaaagcacttggctgaagcactcgtgcatagtaattgtaaattaaaaaggttaaacctcagtggcaataagaaaataacagatgcaggagtagagcacttggctgaagcactcgtgcatagtaactgttcattaaacagccttgacctcagttggaataatgcaataacagatgcaggagtaaagcacttggcggaagcactcatgcatagtaattacgaactaggtagcagaaactatcctgacatcaaagtaacagctaaagttaaagagcacgtgtctgaggaaggtttgggttga

Transcript

evm.model.Ap12.502

ATGAAACCAGCAGAACACAACACGCAGGACAGAACTCCTGTTTCAGGAATAGATTCAGGTGGATCTCTTGATGGTTGGCACCGGGAAGCATCTGAAGCACATGTGTCATCAGGAGATACCCAGCCTTTGTCCACTGGGCCTGAAGCTCTCCAAACACTTACTGTCATTCCGACAGCAGAGGAACTCTTTCGTTCAATTGTTTCAAATTTCTGGCAGACTACACAACCAAGGAGCATGGATGACCATTATAATTTCTTGGCATATGCGAAAGAAATGCGACTCGTTATCACAGGTGTTAATGTAGGAAGTTTGGTGATAACTGTAAAGTTTGATTCACTCCAGAGCCTGGAGGGACTGTGGAAAGATTATTCATCTGGCCATCTTGGTGAAGTGGTTCAAAGATGTTTCGTGACAGAAGAGATCTTGAGGGAATTTAGCCTCGCAGAGTTAAAGCTTAAAACAACAATCTTGGAAGAGGAGTATAAAGTATGCAAAGTGTACTTTGAGAAAAATCCAGCAAGAGATCAATGTGAAAGTATAGCAGTACCTGAAGGAAATCAAGGCCATTTCACTGATGAAAAGATTTTAATGGAAACAGATAACAAAGATGATTTACCAACAGAAGAAACAGATGATGAAAAACTGAAAACTGAAGCTGACGAGGACGTATCAGATGATGAAGATCAATGTGAAAGTGTGGCTGTACTCGGGGAAAAGGCAACCCATTCTACTAAAGAAAAGATGTTAACAGGAACTGAAGGTGATTCGCCAACACAAACAGATGAAGAAGATTCTTTAATATCAGACGATGAAGGTCAAAATGAAAGTGTAGCTGACATACAACTTCTAACAACACACTTCTCTCTTCTGGATGTCAGAAAACCTTCAAGAGAAAGTCGTGATTCAGGATTTTCATCTTCGTCTTCCCGCACTAGTTCTTCTTCTACTAGTTTTCCTCACACTAGTTCCAAGCGTGAAGCCCCACATCTGAAAATAAGGAGTCACAGAATGCAACAGATAGTTAGAGAGGGATTGCAGATGTTTGACATCAATTCACCTGAAGAACTTCAAGACTATGTGACCTACTTAACTAACAAGATGTTCAGTGCAGGCAAAGACTCTCCCTCCGTGAAGAATTTAACAGAATTTATGGATGATTTTGAATTGAAACAATTTGTTTCTATTCATGTCAAGGAAGATAAATGGCAAGTAGTAGTGTGGGTTTTGAATGAGCTGCTTCGTCGTAAAGGAGTACTATCGAGAATAATATCAGCAGCTCAGAAAGAAGGCTGGGAGACTAAGGAGGATAAGGAAAGCGATGATTCGCAGTCAGTAGCATTAACCTGGTGGCCAACAAATGAGGACCAAGAGTTAGTAACATTGTGTAAAGTACTGACTGAGAGCAATCTTAGAGTGAACAGCCCAGACCTCAGTTGCAATACGAGAGATGCAGGAGTAAAGCACTTGGCTGAAGCACTCATGCATAGTAACTGTTCATTAAACAGCCTTGACCTCAGATGGAATGATGCAATAACAGATGCAGGAGTAAAGCACTTGGCTGAAGCACTCATGCATAGTAACTGTTCATTAAACAGCCTAAACCTCAGTCACAATAAGCAAATAACTGATGCAGGAGTAAAGCACTTGGCTGAAGCACTCATGCATAGTAACTGTTCATTAAACAGCCTTGACCTCAGATGGAATGATGCAATAACAGATGCAGGAGTAAAGCACTTGGCTGAAGCACTCATGCATAGTAACTGTTCATTAAACAGCCTAAACCTCAGTGGCAATTATGCAATAACAGATGCAGGAGTAAAGCACTTGGCTGAAGCGCTCATGCATAGTAACTGTTCATTAAACAGCCTAGACCTCAGTTTCAATAATGCAATAACAGATGCAGGAGTAAAGCACTTGGCTGAAGCACTCATGCATAGTAACTGTTCATTAAACAGCCTTGACCTCAGTAGCAATGATGCAATAACAGATGTAGGAGTAAAGCACTTGGCTGAAGCACTCATGCATAGTAACTGTTCATTAAACAGCCTAGACCTCAGTTTCAATAATGCAATAACAGATGTAGGAGTAAAGCACTTGGCTGAAGCACTCATGCATAGTAACTGTTCATTAAACAGCCTAGACCTCAGTTTCAATAATGCAATAACAGATGCTGGAGTAAAGCACTTGGCTGAAGCACTCATGCATAGTAACTGTTCATTAAACAGCCTTGACCTCAGTTGGAATGATGCAATAACAGATGCAGGAGTAAAGCACTTGGCTGAAGCACTCGTGCATAGTAATTGTAAATTAAAAAGGTTAAACCTCAGTGGCAATAAGAAAATAACAGATGCAGGAGTAGAGCACTTGGCTGAAGCACTCGTGCATAGTAACTGTTCATTAAACAGCCTTGACCTCAGTTGGAATAATGCAATAACAGATGCAGGAGTAAAGCACTTGGCGGAAGCACTCATGCATAGTAATTACGAACTAGGTAGCAGAAACTATCCTGACATCAAAGTAACAGCTAAAGTTAAAGAGCACGTGTCTGAGGAAGGTTTGGGTTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000971 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20694 all species →	TRADD-like_N	TRADD-like N-terminal domain	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051279 all species →	Family	Protein Phosphatase 1 Regulatory and Actin Interaction Protein	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR049341 all species →	Domain	TRADD-like N-terminal domain	Interproscan
IPR031877 all species →	Family	Metal-binding protein SmbP	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24112 all species →	LEUCINE-RICH REPEAT, ISOFORM F-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0030027 all species →	Cellular Component	lamellipodium	Interproscan
GO:0034315 all species →	Biological Process	regulation of Arp2/3 complex-mediated actin nucleation	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap12.502.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.