Genomic Location: Ap12:5917062...5923694
NR annotation: XP_020621192.1, myocardin-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap12.542 |
| Transcript |
| evm.model.Ap12.542 |
| Protein |
| evm.model.Ap12.542 |
| UniProt accession | Description |
|---|---|
| Q7YR76 | Myocardin OS=Sus scrofa OX=9823 GN=MYOCD PE=2 SV=1 |
| Q969V6 | Myocardin-related transcription factor A OS=Homo sapiens OX=9606 GN=MRTFA PE=1 SV=1 |
| Q9ULH7 | Myocardin-related transcription factor B OS=Homo sapiens OX=9606 GN=MRTFB PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004833 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02755 all species → | RPEL | RPEL repeat | Disordered | Interproscan |
| PF02037 all species → | SAP | SAP domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003034 all species → | Domain | SAP domain | Interproscan |
| IPR004018 all species → | Repeat | RPEL repeat | Interproscan |
| IPR036361 all species → | Homologous_superfamily | SAP domain superfamily | Interproscan |
| IPR043451 all species → | Family | Myocardin-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22793 all species → | MYOCARDIN-RELATED TRANSCRIPTION FACTOR-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003713 all species → | Molecular Function | transcription coactivator activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0045944 all species → | Biological Process | positive regulation of transcription by RNA polymerase II | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K22525 | MKL; MKL/myocardin-like protein | - | Transcription | - | deepkoala |
Transcript abundance of evm.model.Ap12.542 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
