Gene detail

Detailed information of evm.model.Ap12.573 in Astrangia poculata

Genomic Location: Ap12:6473014...6482135
NR annotation: KAJ7340156.1, NADH:ubiquinone oxidoreductase [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DK98	Nuclear distribution protein nudE-like 1-A OS=Xenopus laevis OX=8355 GN=ndel1-a PE=2 SV=1
Q66IZ7	Nuclear distribution protein nudE-like 1-B OS=Xenopus laevis OX=8355 GN=ndel1-b PE=2 SV=1
Q28CJ6	Nuclear distribution protein nudE-like 1 OS=Xenopus tropicalis OX=8364 GN=ndel1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008166 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04880 all species →	NUDE_C	NUDE protein, C-terminal conserved region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006964 all species →	Domain	NUDE domain	Interproscan
IPR033494 all species →	Family	NUDE family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10921 all species →	NUCLEAR DISTRIBUTION PROTEIN NUDE HOMOLOG 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000132 all species →	Biological Process	establishment of mitotic spindle orientation	Interproscan
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005871 all species →	Cellular Component	kinesin complex	Interproscan
GO:0007020 all species →	Biological Process	microtubule nucleation	Interproscan
GO:0007059 all species →	Biological Process	chromosome segregation	Interproscan
GO:0007100 all species →	Biological Process	mitotic centrosome separation	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0047496 all species →	Biological Process	vesicle transport along microtubule	Interproscan
GO:0051303 all species →	Biological Process	establishment of chromosome localization	Interproscan
GO:0051642 all species →	Biological Process	centrosome localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16739	NDEL1; nuclear distribution protein NudE-like 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.