Genomic Location: Ap12:8954812...8961389
NR annotation: XP_020627866.1, Golgi apparatus membrane protein TVP23 homolog B-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap12.812 |
| Transcript |
| evm.model.Ap12.812 |
| Protein |
| evm.model.Ap12.812 |
| UniProt accession | Description |
|---|---|
| A6NH52 | Golgi apparatus membrane protein TVP23 homolog A OS=Homo sapiens OX=9606 GN=TVP23A PE=1 SV=3 |
| Q29S14 | Golgi apparatus membrane protein TVP23 homolog B OS=Bos taurus OX=9913 GN=TVP23B PE=2 SV=1 |
| Q9NYZ1 | Golgi apparatus membrane protein TVP23 homolog B OS=Homo sapiens OX=9606 GN=TVP23B PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006324 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05832 all species → | DUF846 | Eukaryotic protein of unknown function (DUF846) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR008564 all species → | Family | Golgi apparatus membrane protein TVP23-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13019 all species → | UNCHARACTERIZED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0009306 all species → | Biological Process | protein secretion | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0016192 all species → | Biological Process | vesicle-mediated transport | Interproscan |
| GO:0030173 all species → | Cellular Component | obsolete integral component of Golgi membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K26752 | TVP23; golgi apparatus membrane protein TVP23 | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of evm.model.Ap12.812 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
