Detailed information of evm.model.Ap12.884 in Astrangia poculata

Genomic Location: Ap12:9526622...9540255
NR annotation: XP_020616949.1, ribosome biogenesis protein TSR3 homolog isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9UJK018S rRNA aminocarboxypropyltransferase OS=Homo sapiens OX=9606 GN=TSR3 PE=1 SV=1
Q5HZH218S rRNA aminocarboxypropyltransferase OS=Mus musculus OX=10090 GN=Tsr3 PE=1 SV=1
Q1040918S rRNA aminocarboxypropyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tsr3 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005539 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04068
all species →		RLIPossible Fer4-like domain in RNase L inhibitor, RLIFamilyInterproscan
PF04034
all species →		Ribo_biogen_CRibosome biogenesis protein, C-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007209
all species →		DomainRNase L inhibitor RLI-like, possible metal-binding domainInterproscan
IPR007177
all species →		Domain16S/18S rRNA aminocarboxypropyltransferase Tsr3, C-terminalInterproscan
IPR022968
all species →		Family16S/18S rRNA aminocarboxypropyltransferase Tsr3Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20426
all species →		RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006364
all species →		Biological ProcessrRNA processingInterproscan
GO:0016740
all species →		Molecular Functiontransferase activityInterproscan
GO:0030490
all species →		Biological Processmaturation of SSU-rRNAInterproscan
GO:0106388
all species →		Molecular Function18S rRNA aminocarboxypropyltransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.884.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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