Gene detail

Detailed information of evm.model.Ap12.887 in Astrangia poculata

Genomic Location: Ap12:9556322...9560422
NR annotation: XP_020616945.1, disintegrin and metalloproteinase domain-containing protein 12-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.887

atgcggtctggcgacactttggcctccaacgctaagcagccggttaatcttcaatacgttatacccagggtaaaatatatcgctggagaacacaagacatggaaacctggcgaattggacgtcgaaacagaaacggccgggaactccgagataaagacagaaattacatttacagcctttcaacaaaacttcacactcgacttgtatcagaaccgcgtcctctttacctcccgatatcttgaaagacacgagcattataacgactctgtaacgaacaggagaaatgtcaatcattgtttctaccacggcactgtgaggggtagggaaaggtcgacagtgtcccttagtacttgtgacgggattgaaggtctagtttacgatgggcgtacgtcttactatatagaaccaacagacaactttcttcatttgttttacagaatgaaagattttaactttaacaaatatcattcagccggacaaagaatagtacaagacgaggatattcacataattaataatcaacgacagttttcaaaaagatctatagaaaacttaaacactcgaagaagaattcgcagagacgtctttactgaaaccaaatacgtcgagttagttataattaacgatcacaaacaattcgaagcttgtgggaaaaacctcacaaagacgaatctgcgcgcaaagcagattgcaaatatggtggatgctatttttaaaccgttgaacgtgcgcgttgcgctcgttgctatagaaacctgggacgtagcggacaaagttaaagcggacgatgatgccgaaagttatttgtcaaacttgataaaatacagaaaaaagatactgcttcaaaagcatccaaacgatgtaacgaaacttttgaccggagtctcactaaaagattccgttcgcggcaaagcgcagattatgacaatatgcacgcgaaagtccgctggcgtgattcaggattacagccgaaacgccgcattcaccgcaaacacgttcgcgcacgagctgggtcacgtgttcggcatgtatcacgatgaagaccttcctcgctgcgtgtgtaacacgcgcgactcgcgagggtgcgtgatgagcgagcatgtcggccgcgagccagccactgagttcagcaattgtagtgtcaaggggctcgaggaaactttatcacggggtttagggtcgtgcctttttaacgtccctagaactttgttcggaggtccggtttgcggggacggaatcgttggaagcggcgaggaatgtgactgtggatccgcgcaggaatgcgctgagaagggagacacttgttgcaatcacgtgacctgcaagctgcgcgcgcatgcacagtgtgcttatggcgcctgctgtgaaaagtgtaggttcaagaagagtggaactgtttgcagagagaaggtaaacgaatgcgacatcccggaatcttgcacgggatcttccgggatttgtccccaggatgtttacgtccagaacggttatccttgtgcaaacaaaactgcttactgttatttaggagaatgtctgacccacgacaagcaatgtcaggacctatggggccgcaatgccgtatcaggtccagataagtgcattaattatcacaatacacgcggcgacaagtttggacattgccgtaagtcaaagaaaggaaaataccgagcttgccagctgcaggactctaggtgcggcaaactgtggtgccttgcaagaactccatggcctatcataggcatacaaagagacgtgatgaaatctcggtggtatcttgatggtaaaattgtcacgtgtaaaggtactagcttacaaatgggcgtggatgtacctgaggctgccatgacactagagggaacaaaatgcggtggtggtaaagtgtgcctgggccgccaatgtgtttctataagtgtacttcttaaaaaggtgcctgggtgttccaaaaactgctcaggtaatggactatgtagcaatgtcgctaaatgccactgttttgaaccgtggactgggatctcttgtagtcaaaagatctcggatgtcaaaccgacatctaaagcaagcgagccgatcaaaacattgttctatagcacaacaacaacttatttatccaccaagaaaccatcaacaattgcaaaaacgacaattgtaactgtaaagccaactccttttcaagaagtagaatctaaggtggtttatactgctgtgtctgcgactgtagtagcgctgatccttctacttgttgtaggactttgtagttataaacgccattacaagcaccagaaatttgtgctgcaaaatacgagtaagaaacgcaaagttgagttgcgggtcaaggttgtcgttatttaa

Transcript

evm.model.Ap12.887

TTAGTTCAGTTTACAAAATGCTTCGAGGAAAAGAACCGCAGTTGGACAATGCGGTCTGGCGACACTTTGGCCTCCAACGCTAAGCAGCCGGTTAATCTTCAATACGTTATACCCAGGGTAAAATATATCGCTGGAGAACACAAGACATGGAAACCTGGCGAATTGGACGTCGAAACAGAAACGGCCGGGAACTCCGAGATAAAGACAGAAATTACATTTACAGCCTTTCAACAAAACTTCACACTCGACTTGTATCAGAACCGCGTCCTCTTTACCTCCCGATATCTTGAAAGACACGAGCATTATAACGACTCTGTAACGAACAGGAGAAATGTCAATCATTGTTTCTACCACGGCACTGTGAGGGGTAGGGAAAGGTCGACAGTGTCCCTTAGTACTTGTGACGGGATTGAAGGTCTAGTTTACGATGGGCGTACGTCTTACTATATAGAACCAACAGACAACTTTCTTCATTTGTTTTACAGAATGAAAGATTTTAACTTTAACAAATATCATTCAGCCGGACAAAGAATAGTACAAGACGAGGATATTCACATAATTAATAATCAACGACAGTTTTCAAAAAGATCTATAGAAAACTTAAACACTCGAAGAAGAATTCGCAGAGACGTCTTTACTGAAACCAAATACGTCGAGTTAGTTATAATTAACGATCACAAACAATTCGAAGCTTGTGGGAAAAACCTCACAAAGACGAATCTGCGCGCAAAGCAGATTGCAAATATGGTGGATGCTATTTTTAAACCGTTGAACGTGCGCGTTGCGCTCGTTGCTATAGAAACCTGGGACGTAGCGGACAAAGTTAAAGCGGACGATGATGCCGAAAGTTATTTGTCAAACTTGATAAAATACAGAAAAAAGATACTGCTTCAAAAGCATCCAAACGATGTAACGAAACTTTTGACCGGAGTCTCACTAAAAGATTCCGTTCGCGGCAAAGCGCAGATTATGACAATATGCACGCGAAAGTCCGCTGGCGTGATTCAGGATTACAGCCGAAACGCCGCATTCACCGCAAACACGTTCGCGCACGAGCTGGGTCACGTGTTCGGCATGTATCACGATGAAGACCTTCCTCGCTGCGTGTGTAACACGCGCGACTCGCGAGGGTGCGTGATGAGCGAGCATGTCGGCCGCGAGCCAGCCACTGAGTTCAGCAATTGTAGTGTCAAGGGGCTCGAGGAAACTTTATCACGGGGTTTAGGGTCGTGCCTTTTTAACGTCCCTAGAACTTTGTTCGGAGGTCCGGTTTGCGGGGACGGAATCGTTGGAAGCGGCGAGGAATGTGACTGTGGATCCGCGCAGGAATGCGCTGAGAAGGGAGACACTTGTTGCAATCACGTGACCTGCAAGCTGCGCGCGCATGCACAGTGTGCTTATGGCGCCTGCTGTGAAAAGTGTAGGTTCAAGAAGAGTGGAACTGTTTGCAGAGAGAAGGTAAACGAATGCGACATCCCGGAATCTTGCACGGGATCTTCCGGGATTTGTCCCCAGGATGTTTACGTCCAGAACGGTTATCCTTGTGCAAACAAAACTGCTTACTGTTATTTAGGAGAATGTCTGACCCACGACAAGCAATGTCAGGACCTATGGGGCCGCAATGCCGTATCAGGTCCAGATAAGTGCATTAATTATCACAATACACGCGGCGACAAGTTTGGACATTGCCGTAAGTCAAAGAAAGGAAAATACCGAGCTTGCCAGCTGCAGGACTCTAGGTGCGGCAAACTGTGGTGCCTTGCAAGAACTCCATGGCCTATCATAGGCATACAAAGAGACGTGATGAAATCTCGGTGGTATCTTGATGGTAAAATTGTCACGTGTAAAGGTACTAGCTTACAAATGGGCGTGGATGTACCTGAGGCTGCCATGACACTAGAGGGAACAAAATGCGGTGGTGGTAAAGTGTGCCTGGGCCGCCAATGTGTTTCTATAAGTGTACTTCTTAAAAAGGTGCCTGGGTGTTCCAAAAACTGCTCAGGTAATGGACTATGTAGCAATGTCGCTAAATGCCACTGTTTTGAACCGTGGACTGGGATCTCTTGTAGTCAAAAGATCTCGGATGTCAAACCGACATCTAAAGCAAGCGAGCCGATCAAAACATTGTTCTATAGCACAACAACAACTTATTTATCCACCAAGAAACCATCAACAATTGCAAAAACGACAATTGTAACTGTAAAGCCAACTCCTTTTCAAGAAGTAGAATCTAAGGTGGTTTATACTGCTGTGTCTGCGACTGTAGTAGCGCTGATCCTTCTACTTGTTGTAGGACTTTGTAGTTATAAACGCCATTACAAGCACCAGAAATTTGTGCTGCAAAATACGAGTAAGAAACGCAAAGTTGAGTTGCGGGTCAAGGTTGTCGTTATTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43184	Disintegrin and metalloproteinase domain-containing protein 12 OS=Homo sapiens OX=9606 GN=ADAM12 PE=1 SV=3
Q61824	Disintegrin and metalloproteinase domain-containing protein 12 OS=Mus musculus OX=10090 GN=Adam12 PE=1 SV=2
Q9H013	Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens OX=9606 GN=ADAM19 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000887 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00200 all species →	Disintegrin	Disintegrin	Domain	Interproscan
PF01421 all species →	Reprolysin	Reprolysin (M12B) family zinc metalloprotease	Domain	Interproscan
PF01562 all species →	Pep_M12B_propep	Reprolysin family propeptide	Family	Interproscan
PF08516 all species →	ADAM_CR	ADAM cysteine-rich	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018358 all species →	Conserved_site	Disintegrin, conserved site	Interproscan
IPR001762 all species →	Domain	Disintegrin domain	Interproscan
IPR036436 all species →	Homologous_superfamily	Disintegrin domain superfamily	Interproscan
IPR006586 all species →	Domain	ADAM, cysteine-rich domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR034027 all species →	Domain	Reprolysin domain, adamalysin-type	Interproscan
IPR001590 all species →	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan
IPR002870 all species →	Domain	Peptidase M12B, propeptide	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11905 all species →	ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap12.887.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.