Genomic Location: Ap12:9602185...9615797
NR annotation: KAJ7376431.1, Mitotic spindle assembly checkpoint protein MAD1 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap12.889 |
| Transcript |
| evm.model.Ap12.889 |
| Protein |
| evm.model.Ap12.889 |
| UniProt accession | Description |
|---|---|
| Q9Y6D9 | Mitotic spindle assembly checkpoint protein MAD1 OS=Homo sapiens OX=9606 GN=MAD1L1 PE=1 SV=2 |
| Q80YF0 | Mitotic spindle assembly checkpoint protein MAD1 OS=Cricetulus griseus OX=10029 GN=MAD1L1 PE=2 SV=1 |
| Q9WTX8 | Mitotic spindle assembly checkpoint protein MAD1 OS=Mus musculus OX=10090 GN=Mad1l1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005177 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05557 all species → | MAD | Mitotic checkpoint protein | Coiled-coil | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR008672 all species → | Family | Spindle assembly checkpoint component Mad1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23168 all species → | MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD1 MITOTIC ARREST DEFICIENT-LIKE PROTEIN 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000776 all species → | Cellular Component | kinetochore | Interproscan |
| GO:0005635 all species → | Cellular Component | nuclear envelope | Interproscan |
| GO:0007094 all species → | Biological Process | mitotic spindle assembly checkpoint signaling | Interproscan |
| GO:0051315 all species → | Biological Process | attachment of mitotic spindle microtubules to kinetochore | Interproscan |
| GO:0072686 all species → | Cellular Component | mitotic spindle | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K06679 | MAD1; mitotic spindle assembly checkpoint protein MAD1 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of evm.model.Ap12.889 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
