Gene detail

Detailed information of evm.model.Ap13.1000 in Astrangia poculata

Genomic Location: Ap13:10425769...10445215
NR annotation: XP_027041123.1, xanthine dehydrogenase/oxidase-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.1000

atggctgttaccacagtggaaggtatcggtagcaccaagactgcactgcatccagtacaggagaggattgctaaatctcatggatcccagtgtggattttgtactccaggaattgtgatgtccatgttcgccctgctgaggaacaaccctttaccaacatacaaggaaatggaaagtgcctttgaaggtaatttatgtcgatgcaccggttacagaccaattatagaaggatttaaaacattcacaaaggaatgctgtggtaaaggtataaatggctgttgcttagacgtcaatcaaaatgaaatcaatgataatcgcacagcagaagaaattgaatcaaacactttcaatgaactggtcaagtctgtggagttcactccatatgacccaacacaggacgcaatatttccacctgaactgatgctttcagatgctgccaagcctaaaagcttgtacattaaaggagaccttgtcacttggatcagaccaacaacattggaagaattgttagaaatgaagatgaaacattcacaagctaaacttgtgattggtaatacagaaatagaatacaagaccagatggttcacagcaatacttcacatgcttaagtggtttgctggtcatcagataagaaacgttggggccattggtggaaatatcatgactgccagtccaatatcagacttgaatccagtattcatggccgcaagatgtacactgctcttggcaacagctggaggaaaaatcaggaaagtcaagttggatgagaattttttcacaggatacagaaaaacaattttagggccaagtgaagtcttaattaacatcctcattccatttacggaaaagcatgaatatgtattctccttcaaacaagctcgtcgacgtgaagatgatatcgccatagtgaacacagccatgcgagtgttgttggagaagcaagctagttccagttcatggcgaatcaaggattgcagtttcagttttggaggcctggctcctacaacagtcatggccatgaaaaccataaagggactcactggcagaaaatgggatgaaagcatagttcaagatgcttgtcagttgttagctgaagatctgccgctcgcacctggggcaccaggtggtcaggtggaatacaggagatcacttgcttcaagcttcttcttcaagttctatctaaacgtttctcagtggcttatcaataatgagttagttgctgatcatttagtacccagaggctatgagagtgtaatcaagccttttcacagagatgctacccgcagcatacagacctatcaggaagtgcccgatgatcaatcattagaggatgtggttggtaggcctgtgcctcacttagcagcagcgaaacacgccacaggagaggcaatctactgtgatgacattcctaagtacgcaggagaactatatttgggaattgttttcagcacacgagcccatgcgaacatcatagctgtagatccaaccgaggcattatgtctccctggggtgaagacatacattagcgcagatgatgtccctggaaacaactcaatgggagctttacaggatgaggaagtttatgcaacagacaaggtgacatgcgtagggcaagtaattggcgccattgccgctgaaactcaggcccaggcccaaagagcagcaaagatggtcaagataacataccaggacttgccaagaatattaacgattgaggaagccatagcagcggagtccttttacgacattgaccagctgtgcattcagaaaggagacctggaaactggctttgttgaatcagatcacgtgttggaaggagagatgagaattggaggacaagaacatttttatttagagacgcaagtcacaatagctgttcctaaaggagaagatggtgaaatggaactctttgtttccactcaaaatccacaaatgacacaggcatctgcagcaagaacccttggagtgccgaacaacagaattgtagtacgaacaaagcgactgggtggcggctttggtggcaaagagacacggaactgtttcctgacaaatgcagtggcagtggctgctgctaaaggatatgatgatgatgatgatgatgatgatgatgatgatgatgacgacgacaactaa

Transcript

evm.model.Ap13.1000

ATGGCTGTTACCACAGTGGAAGGTATCGGTAGCACCAAGACTGCACTGCATCCAGTACAGGAGAGGATTGCTAAATCTCATGGATCCCAGTGTGGATTTTGTACTCCAGGAATTGTGATGTCCATGTTCGCCCTGCTGAGGAACAACCCTTTACCAACATACAAGGAAATGGAAAGTGCCTTTGAAGGTAATTTATGTCGATGCACCGGTTACAGACCAATTATAGAAGGATTTAAAACATTCACAAAGGAATGCTGTGGTAAAGGTATAAATGGCTGTTGCTTAGACGTCAATCAAAATGAAATCAATGATAATCGCACAGCAGAAGAAATTGAATCAAACACTTTCAATGAACTGGTCAAGTCTGTGGAGTTCACTCCATATGACCCAACACAGGACGCAATATTTCCACCTGAACTGATGCTTTCAGATGCTGCCAAGCCTAAAAGCTTGTACATTAAAGGAGACCTTGTCACTTGGATCAGACCAACAACATTGGAAGAATTGTTAGAAATGAAGATGAAACATTCACAAGCTAAACTTGTGATTGGTAATACAGAAATAGAATACAAGACCAGATGGTTCACAGCAATACTTCACATGCTTAAGTGGTTTGCTGGTCATCAGATAAGAAACGTTGGGGCCATTGGTGGAAATATCATGACTGCCAGTCCAATATCAGACTTGAATCCAGTATTCATGGCCGCAAGATGTACACTGCTCTTGGCAACAGCTGGAGGAAAAATCAGGAAAGTCAAGTTGGATGAGAATTTTTTCACAGGATACAGAAAAACAATTTTAGGGCCAAGTGAAGTCTTAATTAACATCCTCATTCCATTTACGGAAAAGCATGAATATGTATTCTCCTTCAAACAAGCTCGTCGACGTGAAGATGATATCGCCATAGTGAACACAGCCATGCGAGTGTTGTTGGAGAAGCAAGCTAGTTCCAGTTCATGGCGAATCAAGGATTGCAGTTTCAGTTTTGGAGGCCTGGCTCCTACAACAGTCATGGCCATGAAAACCATAAAGGGACTCACTGGCAGAAAATGGGATGAAAGCATAGTTCAAGATGCTTGTCAGTTGTTAGCTGAAGATCTGCCGCTCGCACCTGGGGCACCAGGTGGTCAGGTGGAATACAGGAGATCACTTGCTTCAAGCTTCTTCTTCAAGTTCTATCTAAACGTTTCTCAGTGGCTTATCAATAATGAGTTAGTTGCTGATCATTTAGTACCCAGAGGCTATGAGAGTGTAATCAAGCCTTTTCACAGAGATGCTACCCGCAGCATACAGACCTATCAGGAAGTGCCCGATGATCAATCATTAGAGGATGTGGTTGGTAGGCCTGTGCCTCACTTAGCAGCAGCGAAACACGCCACAGGAGAGGCAATCTACTGTGATGACATTCCTAAGTACGCAGGAGAACTATATTTGGGAATTGTTTTCAGCACACGAGCCCATGCGAACATCATAGCTGTAGATCCAACCGAGGCATTATGTCTCCCTGGGGTGAAGACATACATTAGCGCAGATGATGTCCCTGGAAACAACTCAATGGGAGCTTTACAGGATGAGGAAGTTTATGCAACAGACAAGGTGACATGCGTAGGGCAAGTAATTGGCGCCATTGCCGCTGAAACTCAGGCCCAGGCCCAAAGAGCAGCAAAGATGGTCAAGATAACATACCAGGACTTGCCAAGAATATTAACGATTGAGGAAGCCATAGCAGCGGAGTCCTTTTACGACATTGACCAGCTGTGCATTCAGAAAGGAGACCTGGAAACTGGCTTTGTTGAATCAGATCACGTGTTGGAAGGAGAGATGAGAATTGGAGGACAAGAACATTTTTATTTAGAGACGCAAGTCACAATAGCTGTTCCTAAAGGAGAAGATGGTGAAATGGAACTCTTTGTTTCCACTCAAAATCCACAAATGACACAGGCATCTGCAGCAAGAACCCTTGGAGTGCCGAACAACAGAATTGTAGTACGAACAAAGCGACTGGGTGGCGGCTTTGGTGGCAAAGAGACACGGAACTGTTTCCTGACAAATGCAGTGGCAGTGGCTGCTGCTAAAGGATATGATGATGATGATGATGATGATGATGATGATGATGATGACGACGACAACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P47990	Xanthine dehydrogenase/oxidase OS=Gallus gallus OX=9031 GN=XDH PE=1 SV=1
P80457	Xanthine dehydrogenase/oxidase OS=Bos taurus OX=9913 GN=XDH PE=1 SV=4
Q00519	Xanthine dehydrogenase/oxidase OS=Mus musculus OX=10090 GN=Xdh PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001294 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02738 all species →	MoCoBD_1	Molybdopterin cofactor-binding domain	Domain	Interproscan
PF03450 all species →	CO_deh_flav_C	CO dehydrogenase flavoprotein C-terminal domain	Domain	Interproscan
PF00941 all species →	FAD_binding_5	FAD binding domain in molybdopterin dehydrogenase	Family	Interproscan
PF01315 all species →	Ald_Xan_dh_C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	Domain	Interproscan
PF01799 all species →	Fer2_2	[2Fe-2S] binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016169 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 2	Interproscan
IPR037165 all species →	Homologous_superfamily	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily	Interproscan
IPR036683 all species →	Homologous_superfamily	CO dehydrogenase flavoprotein, C-terminal domain superfamily	Interproscan
IPR008274 all species →	Domain	Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domain	Interproscan
IPR005107 all species →	Domain	CO dehydrogenase flavoprotein, C-terminal	Interproscan
IPR002346 all species →	Domain	Molybdopterin dehydrogenase, FAD-binding	Interproscan
IPR016166 all species →	Domain	FAD-binding domain, PCMH-type	Interproscan
IPR016208 all species →	Family	Aldehyde oxidase/xanthine dehydrogenase-like	Interproscan
IPR000674 all species →	Domain	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	Interproscan
IPR036884 all species →	Homologous_superfamily	[2Fe-2S]-binding domain superfamily	Interproscan
IPR036318 all species →	Homologous_superfamily	FAD-binding, type PCMH-like superfamily	Interproscan
IPR002888 all species →	Domain	[2Fe-2S]-binding	Interproscan
IPR036856 all species →	Homologous_superfamily	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11908 all species →	XANTHINE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.1000.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.