Detailed information of evm.model.Ap13.1004 in Astrangia poculata

Genomic Location: Ap13:10490892...10499648
NR annotation: XP_029187405.1, dynein axonemal light chain 1-like [Acropora millepora]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q05A62Dynein axonemal light chain 1 OS=Mus musculus OX=10090 GN=Dnal1 PE=1 SV=2
Q2KID4Dynein axonemal light chain 1 OS=Bos taurus OX=9913 GN=DNAL1 PE=2 SV=1
A0A096MJZ0Dynein axonemal light chain 1 OS=Rattus norvegicus OX=10116 GN=Dnal1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006736 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12799
all species →		LRR_4Leucine Rich repeats (2 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001611
all species →		RepeatLeucine-rich repeatInterproscan
IPR025875
all species →		RepeatLeucine rich repeat 4Interproscan
IPR032675
all species →		Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15454
all species →		NISCHARIN RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0036158
all species →		Biological Processouter dynein arm assemblyInterproscan
GO:0043014
all species →		Molecular Functionalpha-tubulin bindingInterproscan
GO:0045504
all species →		Molecular Functiondynein heavy chain bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10411DNAL1; dynein axonemal light chain 1-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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