Gene detail

Detailed information of evm.model.Ap13.1017 in Astrangia poculata

Genomic Location: Ap13:10581144...10595861
NR annotation: XP_020627851.1, bromodomain adjacent to zinc finger domain protein 1A-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.1017

atgcctttgctgaatagaaaaccgttttcacctataaaaccgcctccagatctcaaacctgacgaagaagtcttcgtttgccgccatacaaatgaagtttttcgcgactataggtcgtttttcgagcgtacaattttgtgtagcagcatgctatggagctgccaatacactggcaagagtggcttaacctaccaagaggcacatgattcagagagggcgattagaaagcaaggccatagcctcccagaacccatccagcgagcggcacttacactcgtccaccacactcaacgtggtcggctagctaatttatgcgacgaagtgttttcatatttgaaggatcactaccaggaaggcgaagaagttgacgttcactacctctcaagcaagaaaagaggcatcataaccagagttattcctccttctgaaggctcaagcccatcaggtaaaacccagagctcaccaaacaagacaggaaagtcaggaaaactcttgtctccaaaatcaagaaaacacagcaactctggagataaacttcattctccgacctctaaggatcgtaacagcccttctgatggaacaccaagaaaagaaaggtgtgatagttcaagtagttcagatagtcagccgttatctagccatgcaaaaaagtacaacgcaaacaatgtgtttgctaaatctccaactggaaaatcaccaagaaagagtttggacgaggaatcacattcaaagcctaaatcaaggaaacaaagtgtggaaagttgtggtgaaaagactgctagcaaatcaaggaagcactcttcagacgggaaaggcacaccatctaaacaaaatagtgataagattgcaaagaagccatccacgccctcttcaaggaaaagcagtgatgataagattgtttctccaaagagcaagtcgtcttgtgatgtaattgcagtagagtcaccaaagacaagtaaatcaccaagtactagtaaaacaaaaagttttgaaggtgaaattgtcatcattgatgatgatgacgataatgataatgatgataataaaaagagctcaaagaagccttctccaaagttgacatctcccaaagagaagccggtgtataactggccatctgctgctctttatcattatgaaatcagaattcattctgacaagaaagataagggatcaaagaagaaagaaaagaaacaggaagttgtgattgttcaagcctcacttgtcagtcggagaaaaggtgtgttcaccagagataaggtgaaaatgttcttgaagatcagttgtgaaagaagtactccccattcagaagagggcgtctatattgtccagagggcataccgacagaaatttgatcttggtgaaccagacatacctttgaagcttgcttctcctccaaagaacaagaaacacaggaaaagaagccttacacatggagaccaggaaggagagggtgggcctgctaagaaaaagaggaaaaagaagaacaaggaagatgagtcaaagaatgaaggagaaggcaccaagaaaaagaaagaaaagaaggaaaaagatggcaaaagtaaagatgacaagaagatgaaacttccacctggagagtggcgcagaatcatggaagaggaaaaggagaagaggaagaagcaaatggaagaagataaagaaagaaagagagtggaaagagaaaaagagaaagctgagaacaaagctaagagagaggaggaaagggcagtcaagaagattgaaagagacaaggaacgtgagaaacagcgagaagaaaagaggctggaagccatacggttaaaggagtggaacaaaccaagagaagacctggagctggatgacttaaaggatcttcccatgaccactccagttgcaatgaagctttcatcagagctgtttggtgatatgatgatggtcttggaatttctcaatgtctttggaaatctgtttgacatcaaagatgaatttccttctggcctttcatttgccatgttagaggaggcactaacagaacacgatgctgaaggcgtgtactatgacttgctgctgttcttactgggagcgatactgcgcactcacttagaggaagaagaggacgaaggtttggatggcactcatgagcacgagcccctcagggaagttgatgatgatggtgacgagaagtcacaagcaactgtttctgcatcggcaacaatggcagctgcttggcccatgcagtaccagggtaaaccactccatgaactgatcatggacccctttacaagctctgagctgttgagactacacctgttatcctctggtgccagaatagggtgtggtgagccatcttatcgctggcagcgtcgaggaggatttacctacagtgatgacgcaggagtagagtttcgccatgcccagcctcagttgttgaaatcattggtaacatgcaatatctatgatatgggtgctgaagacaaacttaaagtcctggtggctctctgcactcagctgataacatatgcaacagcccgagactatgtggaagaaggctttgaccagtgtcgcaaggtacgccgtgagtggcaggaggatcagtgggcagatcaacgaaaggagaaggaggaagctgctgcaaggtaccgacgtaaacaggaagagaggcagcgacagaaggaggagctggagaaacgaaagaaagaaaaggatcaggagaagatagatggtgcaaaaggagagtcgagtgcaaaatctgaggatgcagccaagaatggctcagaacagaatgaagaagatcaagtgaagaaaggaggcaagaaaactgctaaaaagaaaaatgaaaacgagagcacctctcaggcaagtgaaacaaaggaatctcccatggtcaacggaaacaaacctacagaggataaggagagtgaggcaagtcaggttcctgttttaactaaagaagaagaagaagagctagcacagcaaagacgggaagaacgcaagcggaaggatcaggagtttttgaaccagttggctaaagcagtagctaggagtgcaatccagccgctgggaagagatagggtgttcaggcggtactgggcattcaggtcactgcgaggattgtttgtggaggatgatgaccctgatcagcacctgctgctggaacccgagtctgaatctgaatcagaggataatgaagaagagagtggtgatgagcaaaaggaagatggcaaagagaatgagaactccacattagacccttgtagttcagctgacacaaagaaggaagagaaacgtttggtgaacggccgtagaaatactgcaaagaatgaaaactttgaacgcaaagttctgaacatgtttaaagcgtaccagctatcaaaggaaacttgtggagatgacgattggtgtaaatcttacaagaaaagacctgttgttaagtggtcctacttcgctgcaaaagaagatgtagataaactgttagactctctgaatccgcgaggatttcgtgagagacttttaaaggatgccgttcaacaggaatacaaacagcttacaattgcagtggagaagtgtcccttgaaagcggaaattcaggctcagaaaaaggactccaagccaaaaggaaggcgaggaggtcgaaatcaaccgacagttgataagtcacggtacaagaccatggaagagttcctagaggcaaacttacgtgatcagattctggatttagaggacagaatatggcaggggaacctgggctccattaggaatgccgaccgtgaggcatggagagccaaagtggagaatggtatctatggtgacgtcagcaagactgaggcactgggcggcgaggagtgcaaacctaatggagtcagtgacgtcaaagagaatggtgacgcagagcttatggaggttgatacaagcgttgaggatgaaggaaaggcgagtgtggacagcagtgtggaggcagtgagtttgagaaggaggagccaatggagtgtgatgaggagaaacagccagttgttaatggagtcaaagaggaaataa

Transcript

evm.model.Ap13.1017

ATGCCTTTGCTGAATAGAAAACCGTTTTCACCTATAAAACCGCCTCCAGATCTCAAACCTGACGAAGAAGTCTTCGTTTGCCGCCATACAAATGAAGTTTTTCGCGACTATAGGTCGTTTTTCGAGCGTACAATTTTGTGTAGCAGCATGCTATGGAGCTGCCAATACACTGGCAAGAGTGGCTTAACCTACCAAGAGGCACATGATTCAGAGAGGGCGATTAGAAAGCAAGGCCATAGCCTCCCAGAACCCATCCAGCGAGCGGCACTTACACTCGTCCACCACACTCAACGTGGTCGGCTAGCTAATTTATGCGACGAAGTGTTTTCATATTTGAAGGATCACTACCAGGAAGGCGAAGAAGTTGACGTTCACTACCTCTCAAGCAAGAAAAGAGGCATCATAACCAGAGTTATTCCTCCTTCTGAAGGCTCAAGCCCATCAGGTAAAACCCAGAGCTCACCAAACAAGACAGGAAAGTCAGGAAAACTCTTGTCTCCAAAATCAAGAAAACACAGCAACTCTGGAGATAAACTTCATTCTCCGACCTCTAAGGATCGTAACAGCCCTTCTGATGGAACACCAAGAAAAGAAAGGTGTGATAGTTCAAGTAGTTCAGATAGTCAGCCGTTATCTAGCCATGCAAAAAAGTACAACGCAAACAATGTGTTTGCTAAATCTCCAACTGGAAAATCACCAAGAAAGAGTTTGGACGAGGAATCACATTCAAAGCCTAAATCAAGGAAACAAAGTGTGGAAAGTTGTGGTGAAAAGACTGCTAGCAAATCAAGGAAGCACTCTTCAGACGGGAAAGGCACACCATCTAAACAAAATAGTGATAAGATTGCAAAGAAGCCATCCACGCCCTCTTCAAGGAAAAGCAGTGATGATAAGATTGTTTCTCCAAAGAGCAAGTCGTCTTGTGATGTAATTGCAGTAGAGTCACCAAAGACAAGTAAATCACCAAGTACTAGTAAAACAAAAAGTTTTGAAGGTGAAATTGTCATCATTGATGATGATGACGATAATGATAATGATGATAATAAAAAGAGCTCAAAGAAGCCTTCTCCAAAGTTGACATCTCCCAAAGAGAAGCCGGTGTATAACTGGCCATCTGCTGCTCTTTATCATTATGAAATCAGAATTCATTCTGACAAGAAAGATAAGGGATCAAAGAAGAAAGAAAAGAAACAGGAAGTTGTGATTGTTCAAGCCTCACTTGTCAGTCGGAGAAAAGGTGTGTTCACCAGAGATAAGGTGAAAATGTTCTTGAAGATCAGTTGTGAAAGAAGTACTCCCCATTCAGAAGAGGGCGTCTATATTGTCCAGAGGGCATACCGACAGAAATTTGATCTTGGTGAACCAGACATACCTTTGAAGCTTGCTTCTCCTCCAAAGAACAAGAAACACAGGAAAAGAAGCCTTACACATGGAGACCAGGAAGGAGAGGGTGGGCCTGCTAAGAAAAAGAGGAAAAAGAAGAACAAGGAAGATGAGTCAAAGAATGAAGGAGAAGGCACCAAGAAAAAGAAAGAAAAGAAGGAAAAAGATGGCAAAAGTAAAGATGACAAGAAGATGAAACTTCCACCTGGAGAGTGGCGCAGAATCATGGAAGAGGAAAAGGAGAAGAGGAAGAAGCAAATGGAAGAAGATAAAGAAAGAAAGAGAGTGGAAAGAGAAAAAGAGAAAGCTGAGAACAAAGCTAAGAGAGAGGAGGAAAGGGCAGTCAAGAAGATTGAAAGAGACAAGGAACGTGAGAAACAGCGAGAAGAAAAGAGGCTGGAAGCCATACGGTTAAAGGAGTGGAACAAACCAAGAGAAGACCTGGAGCTGGATGACTTAAAGGATCTTCCCATGACCACTCCAGTTGCAATGAAGCTTTCATCAGAGCTGTTTGGTGATATGATGATGGTCTTGGAATTTCTCAATGTCTTTGGAAATCTGTTTGACATCAAAGATGAATTTCCTTCTGGCCTTTCATTTGCCATGTTAGAGGAGGCACTAACAGAACACGATGCTGAAGGCGTGTACTATGACTTGCTGCTGTTCTTACTGGGAGCGATACTGCGCACTCACTTAGAGGAAGAAGAGGACGAAGGTTTGGATGGCACTCATGAGCACGAGCCCCTCAGGGAAGTTGATGATGATGGTGACGAGAAGTCACAAGCAACTGTTTCTGCATCGGCAACAATGGCAGCTGCTTGGCCCATGCAGTACCAGGGTAAACCACTCCATGAACTGATCATGGACCCCTTTACAAGCTCTGAGCTGTTGAGACTACACCTGTTATCCTCTGGTGCCAGAATAGGGTGTGGTGAGCCATCTTATCGCTGGCAGCGTCGAGGAGGATTTACCTACAGTGATGACGCAGGAGTAGAGTTTCGCCATGCCCAGCCTCAGTTGTTGAAATCATTGGTAACATGCAATATCTATGATATGGGTGCTGAAGACAAACTTAAAGTCCTGGTGGCTCTCTGCACTCAGCTGATAACATATGCAACAGCCCGAGACTATGTGGAAGAAGGCTTTGACCAGTGTCGCAAGGTACGCCGTGAGTGGCAGGAGGATCAGTGGGCAGATCAACGAAAGGAGAAGGAGGAAGCTGCTGCAAGGTACCGACGTAAACAGGAAGAGAGGCAGCGACAGAAGGAGGAGCTGGAGAAACGAAAGAAAGAAAAGGATCAGGAGAAGATAGATGGTGCAAAAGGAGAGTCGAGTGCAAAATCTGAGGATGCAGCCAAGAATGGCTCAGAACAGAATGAAGAAGATCAAGTGAAGAAAGGAGGCAAGAAAACTGCTAAAAAGAAAAATGAAAACGAGAGCACCTCTCAGGCAAGTGAAACAAAGGAATCTCCCATGGTCAACGGAAACAAACCTACAGAGGATAAGGAGAGTGAGGCAAGTCAGGTTCCTGTTTTAACTAAAGAAGAAGAAGAAGAGCTAGCACAGCAAAGACGGGAAGAACGCAAGCGGAAGGATCAGGAGTTTTTGAACCAGTTGGCTAAAGCAGTAGCTAGGAGTGCAATCCAGCCGCTGGGAAGAGATAGGGTGTTCAGGCGGTACTGGGCATTCAGGTCACTGCGAGGATTGTTTGTGGAGGATGATGACCCTGATCAGCACCTGCTGCTGGAACCCGAGTCTGAATCTGAATCAGAGGATAATGAAGAAGAGAGTGGTGATGAGCAAAAGGAAGATGGCAAAGAGAATGAGAACTCCACATTAGACCCTTGTAGTTCAGCTGACACAAAGAAGGAAGAGAAACGTTTGGTGAACGGCCGTAGAAATACTGCAAAGAATGAAAACTTTGAACGCAAAGTTCTGAACATGTTTAAAGCGTACCAGCTATCAAAGGAAACTTGTGGAGATGACGATTGGTGTAAATCTTACAAGAAAAGACCTGTTGTTAAGTGGTCCTACTTCGCTGCAAAAGAAGATGTAGATAAACTGTTAGACTCTCTGAATCCGCGAGGATTTCGTGAGAGACTTTTAAAGGATGCCGTTCAACAGGAATACAAACAGCTTACAATTGCAGTGGAGAAGTGTCCCTTGAAAGCGGAAATTCAGGCTCAGAAAAAGGACTCCAAGCCAAAAGGAAGGCGAGGAGGTCGAAATCAACCGACAGTTGATAAGTCACGGTACAAGACCATGGAAGAGTTCCTAGAGGCAAACTTACGTGATCAGATTCTGGATTTAGAGGACAGAATATGGCAGGGGAACCTGGGCTCCATTAGGAATGCCGACCGTGAGGCATGGAGAGCCAAAGTGGAGAATGGTATCTATGGTGACGTCAGCAAGACTGAGGCACTGGGCGGCGAGGAGTGCAAACCTAATGGAGTCAGTGACGTCAAAGAGAATGGTGACGCAGAGCTTATGGAGGTTGATACAAGCGTTGAGGATGAAGGAAAGGCGAGTGTGGACAGCAGTGTGGAGGCAGTGAGTTTGAGAAGGAGGAGCCAATGGAGTGTGATGAGGAGAAACAGCCAGTTGTTAATGGAGTCAAAGAGGAAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NRL2	Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens OX=9606 GN=BAZ1A PE=1 SV=2
O88379	Bromodomain adjacent to zinc finger domain protein 1A OS=Mus musculus OX=10090 GN=Baz1a PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005027 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10537 all species →	WAC_Acf1_DNA_bd	ATP-utilising chromatin assembly and remodelling N-terminal	Domain	Interproscan
PF15613 all species →	WSD	Williams-Beuren syndrome DDT (WSD), D-TOX E motif	Family	Interproscan
PF15612 all species →	WHIM1	WSTF, HB1, Itc1p, MBD9 motif 1	Motif	Interproscan
PF02791 all species →	DDT	DDT domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013136 all species →	Domain	WSTF/Acf1/Cbp146	Interproscan
IPR028941 all species →	Domain	WHIM2 domain	Interproscan
IPR028942 all species →	Domain	WHIM1 domain	Interproscan
IPR047171 all species →	Family	Bromodomain adjacent to zinc finger domain protein 1A	Interproscan
IPR018501 all species →	Domain	DDT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46510 all species →	BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000228 all species →	Cellular Component	nuclear chromosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008623 all species →	Cellular Component	CHRAC	Interproscan
GO:0031445 all species →	Biological Process	regulation of heterochromatin formation	Interproscan
GO:0045740 all species →	Biological Process	positive regulation of DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.1017.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.