Gene detail

Detailed information of evm.model.Ap13.1053 in Astrangia poculata

Genomic Location: Ap13:10948088...10957996
NR annotation: XP_020620833.1, tauropine dehydrogenase-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.1053

atggccaccgccccagacccagatgaagtgcttcgttcaacaactggaaaaaccaattttcaacgtgttacacggcttttgataagtggaggcaccacactactgagggagatttttgatcaactttgtccaccaagtaatctccccaccatactaaataatacagcaacagagaaacaactcaatgcagcaaagctcaccaaggcacagtgggattgtctttacccctccccaggggtgtatggcaagtcagaagattttgatgtaactttgctcttcaggttactgaggacaatctgtaacttgatccctcctgtgtcgggctgggatgctccaccagcaagtacaaaccacagtttagcttcagatttggtgagagttaaaaatttacgcaactctgtttatggccatgtgaaccaaaacatggagatagcagatgaagagtttccatcactttggcaagaaatcagcgaaactttgataagaattgctggacaaatcagtcatgaaaggaaacagggatggcagaaggccattgataactttttgacagagccgcttactacagctcgacttcaactgcggatcatctgtgaagcaatctcaggacctggtctaaaagaaggatcttcagagatcacatcatgccagcaggaagcatcagccacggcagaaaacagaaaccttcccactgcagaaggagttttgaatttcattgcactcaagtactttaaggttgttgatccctctaagccagaagagttgaatgcttatctaaaatatctgatagatatacgcaaagtactttttgtggatgccaagcaagaaagcttgataatcacggtggaatgtagctctctggaaatactcgaagaactatgggaagactatcattcaggccacttgaatgaaatggcacaaaaacatcttattacgaaggacattttgaaagagtttgatcttactgaagtgaaacttttgacaacaattttacaggaggaatacttagcttgtcaacagtatttcctagagaatgcagtgccctctccaccatacatgacaacaaagagcgccacagatttcaaccggccacaagtggaagcttctgggcaggaaaaccaagtgccaattgaagcagaggaatcaatatctcagcaagataatgctggacactatgctccatcagacaatgtggacacttctctagtgaacattgaggacacctccagcagtggggacaactatcaagcaaacattgatctacagatcaatgttcttcttgatgccattaaacctcacataaaacctggcacaataatagttggtctaccagggggcccaggttttaagttccagatacgtgaggtgcttggtgatgtagcccggcaatgcaccattatgaattttgagtcatcaccttgggtgagtcgtaccactgagtttggtgtaaagtgtgaagttcttggtaccaaagagaccctactgggagccttgaagcaaggagagggtgttgcgcccaagaaggacccagtttccacactgcaatatcttctgggacacctccctaaactgaatgtctctggtcacctgttgggtgttacattgatgagcactgacgcctacttgcacccgtcaatactatatggtcagtggaaggggtgggacggaaaaccacttgacgaaccacccctgttctacaatggcctgactgagccagctgcgaaccttctctccagtgtatcagatgaggttgtaaaaactgccaaggttgtcggggagaagtcaggaactgacatgtctaatgttgtccacatctaccagtggtacatgcgatgctattcgcaaaatatctctgacaagaccagcctttacaccgcaatacagaccaatgcggcctaccaaggtctgaaacatcccgtcaagaaaacagaagacggtaaattcatgccagatttcacgtaccgttacatgacggaggacatcccttatggtttggtagtcatccggggtattgcagaaattgtgggtgtaaaaacgccgaatatcgacaaggttcttacatggtgtcaggagaaaatgggcaaagaatatctcgtgaactcaaagatacaaggcaaagatgtctcgtcatccagagcaccgcagagatacgggttcactactcttgaatccatcttgtaa

Transcript

evm.model.Ap13.1053

ATGGCCACCGCCCCAGACCCAGATGAAGTGCTTCGTTCAACAACTGGAAAAACCAATTTTCAACGTGTTACACGGCTTTTGATAAGTGGAGGCACCACACTACTGAGGGAGATTTTTGATCAACTTTGTCCACCAAGTAATCTCCCCACCATACTAAATAATACAGCAACAGAGAAACAACTCAATGCAGCAAAGCTCACCAAGGCACAGTGGGATTGTCTTTACCCCTCCCCAGGGGTGTATGGCAAGTCAGAAGATTTTGATGTAACTTTGCTCTTCAGGTTACTGAGGACAATCTGTAACTTGATCCCTCCTGTGTCGGGCTGGGATGCTCCACCAGCAAGTACAAACCACAGTTTAGCTTCAGATTTGGTGAGAGTTAAAAATTTACGCAACTCTGTTTATGGCCATGTGAACCAAAACATGGAGATAGCAGATGAAGAGTTTCCATCACTTTGGCAAGAAATCAGCGAAACTTTGATAAGAATTGCTGGACAAATCAGTCATGAAAGGAAACAGGGATGGCAGAAGGCCATTGATAACTTTTTGACAGAGCCGCTTACTACAGCTCGACTTCAACTGCGGATCATCTGTGAAGCAATCTCAGGACCTGGTCTAAAAGAAGGATCTTCAGAGATCACATCATGCCAGCAGGAAGCATCAGCCACGGCAGAAAACAGAAACCTTCCCACTGCAGAAGGAGTTTTGAATTTCATTGCACTCAAGTACTTTAAGGTTGTTGATCCCTCTAAGCCAGAAGAGTTGAATGCTTATCTAAAATATCTGATAGATATACGCAAAGTACTTTTTGTGGATGCCAAGCAAGAAAGCTTGATAATCACGGTGGAATGTAGCTCTCTGGAAATACTCGAAGAACTATGGGAAGACTATCATTCAGGCCACTTGAATGAAATGGCACAAAAACATCTTATTACGAAGGACATTTTGAAAGAGTTTGATCTTACTGAAGTGAAACTTTTGACAACAATTTTACAGGAGGAATACTTAGCTTGTCAACAGTATTTCCTAGAGAATGCAGTGCCCTCTCCACCATACATGACAACAAAGAGCGCCACAGATTTCAACCGGCCACAAGTGGAAGCTTCTGGGCAGGAAAACCAAGTGCCAATTGAAGCAGAGGAATCAATATCTCAGCAAGATAATGCTGGACACTATGCTCCATCAGACAATGTGGACACTTCTCTAGTGAACATTGAGGACACCTCCAGCAGTGGGGACAACTATCAAGCAAACATTGATCTACAGATCAATGTTCTTCTTGATGCCATTAAACCTCACATAAAACCTGGCACAATAATAGTTGGTCTACCAGGGGGCCCAGGTTTTAAGTTCCAGATACGTGAGGTGCTTGGTGATGTAGCCCGGCAATGCACCATTATGAATTTTGAGTCATCACCTTGGGTGAGTCGTACCACTGAGTTTGGTGTAAAGTGTGAAGTTCTTGGTACCAAAGAGACCCTACTGGGAGCCTTGAAGCAAGGAGAGGGTGTTGCGCCCAAGAAGGACCCAGTTTCCACACTGCAATATCTTCTGGGACACCTCCCTAAACTGAATGTCTCTGGTCACCTGTTGGGTGTTACATTGATGAGCACTGACGCCTACTTGCACCCGTCAATACTATATGGTCAGTGGAAGGGGTGGGACGGAAAACCACTTGACGAACCACCCCTGTTCTACAATGGCCTGACTGAGCCAGCTGCGAACCTTCTCTCCAGTGTATCAGATGAGGTTGTAAAAACTGCCAAGGTTGTCGGGGAGAAGTCAGGAACTGACATGTCTAATGTTGTCCACATCTACCAGTGGTACATGCGATGCTATTCGCAAAATATCTCTGACAAGACCAGCCTTTACACCGCAATACAGACCAATGCGGCCTACCAAGGTCTGAAACATCCCGTCAAGAAAACAGAAGACGGTAAATTCATGCCAGATTTCACGTACCGTTACATGACGGAGGACATCCCTTATGGTTTGGTAGTCATCCGGGGTATTGCAGAAATTGTGGGTGTAAAAACGCCGAATATCGACAAGGTTCTTACATGGTGTCAGGAGAAAATGGGCAAAGAATATCTCGTGAACTCAAAGATACAAGGCAAAGATGTCTCGTCATCCAGAGCACCGCAGAGATACGGGTTCACTACTCTTGAATCCATCTTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8T882	Tauropine dehydrogenase OS=Arabella iricolor OX=65494 GN=tadh PE=1 SV=1
Q8N0N9	Opine dehydrogenase OS=Haliotis discus hannai OX=42344 GN=tadh PE=2 SV=1
Q8N0P0	Octopine dehydrogenase OS=Mizuhopecten yessoensis OX=6573 GN=odh PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001044 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02317 all species →	Octopine_DH	NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	Family	Interproscan
PF20694 all species →	TRADD-like_N	TRADD-like N-terminal domain	Domain	Interproscan
PF18738 all species →	HEPN_DZIP3	DZIP3/ hRUL138-like HEPN	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003421 all species →	Domain	Opine dehydrogenase	Interproscan
IPR049341 all species →	Domain	TRADD-like N-terminal domain	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR013328 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR041249 all species →	Domain	DZIP3-like HEPN domain	Interproscan
IPR051729 all species →	Family	Opine/Lysopine Dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR38015 all species →	BLR6086 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.1053.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.