Gene detail

Detailed information of evm.model.Ap13.1131 in Astrangia poculata

Genomic Location: Ap13:11654386...11671902
NR annotation: XP_020627678.1, protein transport protein Sec23A-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.1131

atgacgacttatcaagactttataactcaaaatgaagatcgtgatggtgttagatttagctggaatgtttggccttcgagccgtttggaagctacgcgaatggttgttcccgtgggttgtatgtatacaccattaaaagaacggccagatttgcccccaatttgttacgatcctgttctgtgtactaggaacacttgtagagcagtgttaaatcctttttgtcaagtggactatagatccaaagtatggcactgcaatttctgcttccagcgaaatgcgttccctcctcagtatgcgggaatatcagaacaacatcagcctgcagagctcattcctcagttctccaccatcgagtatactctacagcgtggtggcggctctggcccattgatctatctgatagtgttggacacatgtatggacgatgaagactttcaagctgtaaaggaatcattgcaaatgtcgctgagtcttatgccgcccaatgctttagttggactcatcacatttggtaaaatggttcatgtccatgagctgggatgtgaaggctgttccaagagctatgtcttcagaggaacaaaggacctcaatgctaaacaaatacaggacatgcttggcttgggaggcggtggacgaggacaacagcctcaaatgagaggaggacctgttccaccacaacagcaaccccatgagacattcaacagatttcttcagccagtccacaaatgtgacatgagccttactgatttactgggagagcttcagcgagacccctggcctgtacccactggaaaaagacccttcagatcaactggtgcagctctgtcaattgctgttggactgttggagtgcacatatcccaacactggtggaaggatcatgctgtttatgggaggacctggaacacagggcccagggatggtagtcgatgaggaattgaagaatccaatgcgatctcatcatgaccttgagaaagacaatgcaagatatgtcagaaaagccatcaagcattacgagggactgtcacggcgtgcagcagagaatggtcatgtggtggatatatttgcatgtcagctggatcagacagggctgcatgagataaagagtttccctaatgtcacaggaggttacatggtgatgggtgactcattcaacacagcgcttttcaaacagacattccaaagagtgtttgccaaagacatgcgtggagagtttaaaatggcttttggtgcaacacttgaagtcaagacatcaagagaactaagagtatcaggtgccataggaccctgtatatcaatggacagaaaaggaccaaatgtttctgaaacagaaattggtgttggaggaacttgtgcatggaagctctgtggtttagagcctcagacaacactgggagttttctttgaaatagttaatcagcacacagccccagtcccccaaggtggacgaggttgcatacagttcatcacacagtaccaacattccagcggtcagcggagagtacgggtcacaacatgcgcacggaactgggtagactcaacaagtattcaacacatcgctgctggtttcgatcaagaagctgcagcagttatgatgagcagagtagctgtattcagaggcgaaggggatgacggtcctgatgtgttacggtggttagatcgcatgctcatacgactgtgtcagaagtttggtgaatatcacaaagatgatcctggctctttccgtctggcagataacttcactctttatccacagtttatgtttcatttgagacgatcacagttccttcaagtgttcaacaacagtcctgacgagacagcgtactacagacacattttgaaccgtgaggatgtgaccaactcgctgattatgattcaacctattctgtactcgtattccttccaaggaccacccgagcccgtgttactagattcaagcagtattttgcccgacagaattctccttctggacacgttctttcagatccttattttccacggagagacaattgcacagtggaaaaaagccggttaccataatgacccgcaatatgaaagcttccgtcaactcctccaaggccctgttgatgatgccggtgagatcttacaggtccgattccccatgccgcgatacatagagactgaacataatggctctcaggcacgtttcctgctgtccaaagtaaacccgtcccagacccataacaacatgttcgcctggggtcaagacgctgctggcgcgcctgtcctgactgatgacttgacaaccaacaagtgtcatcgacaacagaaattctccatgcgactgtgccttgcttttgcggttgtttggctttctatcttcgcgtctgaagggctgggagcgaacaaagggagtcatcctattggaaaactagcaaagcacagaggtttcaagaaaataagcgaggaaaaattgctgagtgaaataaaagaacatttagtcagacataagcttaaagacaaacttatcgccagcaagactaacaagaaaagccacgcattgctaagcaaggcttacgagctgcgaaccaagcttaagaaaccaattagaaaacacatcttcacaagaaacaacactttgcagttttcaaggccaagtcccttcgtaacgcaaaccttcagaaatgatcgtgttccaaaggcatccttgattaagcttgtgtctggcgggacaagagattctggtgaagattccgatgaagtattcaatgaagaaaatgcatccattagagataaaattaaagacaatgtggttttacagaacataaaaaatggcaccgattcggactcggattcgggcgaaccaatcacagaggactctgatgagaatgaaaacgagggtgactctgccccaggtcatgcgcgcggggaagatcgtgttgcagacgaagagaaaaaacctgtcgaagacgcagaagacaatctcgcgcatcaagacaagcaggaaacaacgctggcaccggaagatgacaacgacaaagatgtcgacgatgaagacgaagataagaatggggcagatgaagaagatgagtcaaaacctagtcaagatgaagaacagcctctgcattcgtcagaatcgttgaagaagcttggagagagcaaaaatcataaggtttcgccttacgaaatctcggaccaaatgagtcaagaaatgctgcacatttacggagcaaacagagatcgaactgccgctatgatagatcgagaacgacatcttgaagcactgaataaccttagggcgtttaccactcaaatgaaacaagacatgcttcagcgattgcggctgggttatagaaatacgtttgctcaaaatgccgccgtgcttccacaattctatattccacaacctttgggtgttatgggtagcattccagaggttcctcgcagggccccgttgcttttagcccccaccgctgcaatctatcgccctgcggcctatgtggatccaccccgcagcaccagtttgctgccacagtcaagcgatcgaggatacagtatcaatgttgacggtttacatggagtattttcaaagactcctggttatgttgtacgattccattcaccagacagcgaagtaacggttgtcaagaaggaaaacgtagttaatccgatggcaacagctggcgaattacagatagaagcagagtga

Transcript

evm.model.Ap13.1131

ATGACGACTTATCAAGACTTTATAACTCAAAATGAAGATCGTGATGGTGTTAGATTTAGCTGGAATGTTTGGCCTTCGAGCCGTTTGGAAGCTACGCGAATGGTTGTTCCCGTGGGTTGTATGTATACACCATTAAAAGAACGGCCAGATTTGCCCCCAATTTGTTACGATCCTGTTCTGTGTACTAGGAACACTTGTAGAGCAGTGTTAAATCCTTTTTGTCAAGTGGACTATAGATCCAAAGTATGGCACTGCAATTTCTGCTTCCAGCGAAATGCGTTCCCTCCTCAGTATGCGGGAATATCAGAACAACATCAGCCTGCAGAGCTCATTCCTCAGTTCTCCACCATCGAGTATACTCTACAGCGTGGTGGCGGCTCTGGCCCATTGATCTATCTGATAGTGTTGGACACATGTATGGACGATGAAGACTTTCAAGCTGTAAAGGAATCATTGCAAATGTCGCTGAGTCTTATGCCGCCCAATGCTTTAGTTGGACTCATCACATTTGGTAAAATGGTTCATGTCCATGAGCTGGGATGTGAAGGCTGTTCCAAGAGCTATGTCTTCAGAGGAACAAAGGACCTCAATGCTAAACAAATACAGGACATGCTTGGCTTGGGAGGCGGTGGACGAGGACAACAGCCTCAAATGAGAGGAGGACCTGTTCCACCACAACAGCAACCCCATGAGACATTCAACAGATTTCTTCAGCCAGTCCACAAATGTGACATGAGCCTTACTGATTTACTGGGAGAGCTTCAGCGAGACCCCTGGCCTGTACCCACTGGAAAAAGACCCTTCAGATCAACTGGTGCAGCTCTGTCAATTGCTGTTGGACTGTTGGAGTGCACATATCCCAACACTGGTGGAAGGATCATGCTGTTTATGGGAGGACCTGGAACACAGGGCCCAGGGATGGTAGTCGATGAGGAATTGAAGAATCCAATGCGATCTCATCATGACCTTGAGAAAGACAATGCAAGATATGTCAGAAAAGCCATCAAGCATTACGAGGGACTGTCACGGCGTGCAGCAGAGAATGGTCATGTGGTGGATATATTTGCATGTCAGCTGGATCAGACAGGGCTGCATGAGATAAAGAGTTTCCCTAATGTCACAGGAGGTTACATGGTGATGGGTGACTCATTCAACACAGCGCTTTTCAAACAGACATTCCAAAGAGTGTTTGCCAAAGACATGCGTGGAGAGTTTAAAATGGCTTTTGGTGCAACACTTGAAGTCAAGACATCAAGAGAACTAAGAGTATCAGGTGCCATAGGACCCTGTATATCAATGGACAGAAAAGGACCAAATGTTTCTGAAACAGAAATTGGTGTTGGAGGAACTTGTGCATGGAAGCTCTGTGGTTTAGAGCCTCAGACAACACTGGGAGTTTTCTTTGAAATAGTTAATCAGCACACAGCCCCAGTCCCCCAAGGTGGACGAGGTTGCATACAGTTCATCACACAGTACCAACATTCCAGCGGTCAGCGGAGAGTACGGGTCACAACATGCGCACGGAACTGGGTAGACTCAACAAGTATTCAACACATCGCTGCTGGTTTCGATCAAGAAGCTGCAGCAGTTATGATGAGCAGAGTAGCTGTATTCAGAGGCGAAGGGGATGACGGTCCTGATGTGTTACGGTGGTTAGATCGCATGCTCATACGACTGTGTCAGAAGTTTGGTGAATATCACAAAGATGATCCTGGCTCTTTCCGTCTGGCAGATAACTTCACTCTTTATCCACAGTTTATGTTTCATTTGAGACGATCACAGTTCCTTCAAGTGTTCAACAACAGTCCTGACGAGACAGCGTACTACAGACACATTTTGAACCGTGAGGATGTGACCAACTCGCTGATTATGATTCAACCTATTCTGTACTCGTATTCCTTCCAAGGACCACCCGAGCCCGTGTTACTAGATTCAAGCAGTATTTTGCCCGACAGAATTCTCCTTCTGGACACGTTCTTTCAGATCCTTATTTTCCACGGAGAGACAATTGCACAGTGGAAAAAAGCCGGTTACCATAATGACCCGCAATATGAAAGCTTCCGTCAACTCCTCCAAGGCCCTGTTGATGATGCCGGTGAGATCTTACAGGTCCGATTCCCCATGCCGCGATACATAGAGACTGAACATAATGGCTCTCAGGCACGTTTCCTGCTGTCCAAAGTAAACCCGTCCCAGACCCATAACAACATGTTCGCCTGGGGTCAAGACGCTGCTGGCGCGCCTGTCCTGACTGATGACTTGACAACCAACAAGTGTCATCGACAACAGAAATTCTCCATGCGACTGTGCCTTGCTTTTGCGGTTGTTTGGCTTTCTATCTTCGCGTCTGAAGGGCTGGGAGCGAACAAAGGGAGTCATCCTATTGGAAAACTAGCAAAGCACAGAGGTTTCAAGAAAATAAGCGAGGAAAAATTGCTGAGTGAAATAAAAGAACATTTAGTCAGACATAAGCTTAAAGACAAACTTATCGCCAGCAAGACTAACAAGAAAAGCCACGCATTGCTAAGCAAGGCTTACGAGCTGCGAACCAAGCTTAAGAAACCAATTAGAAAACACATCTTCACAAGAAACAACACTTTGCAGTTTTCAAGGCCAAGTCCCTTCGTAACGCAAACCTTCAGAAATGATCGTGTTCCAAAGGCATCCTTGATTAAGCTTGTGTCTGGCGGGACAAGAGATTCTGGTGAAGATTCCGATGAAGTATTCAATGAAGAAAATGCATCCATTAGAGATAAAATTAAAGACAATGTGGTTTTACAGAACATAAAAAATGGCACCGATTCGGACTCGGATTCGGGCGAACCAATCACAGAGGACTCTGATGAGAATGAAAACGAGGGTGACTCTGCCCCAGGTCATGCGCGCGGGGAAGATCGTGTTGCAGACGAAGAGAAAAAACCTGTCGAAGACGCAGAAGACAATCTCGCGCATCAAGACAAGCAGGAAACAACGCTGGCACCGGAAGATGACAACGACAAAGATGTCGACGATGAAGACGAAGATAAGAATGGGGCAGATGAAGAAGATGAGTCAAAACCTAGTCAAGATGAAGAACAGCCTCTGCATTCGTCAGAATCGTTGAAGAAGCTTGGAGAGAGCAAAAATCATAAGGTTTCGCCTTACGAAATCTCGGACCAAATGAGTCAAGAAATGCTGCACATTTACGGAGCAAACAGAGATCGAACTGCCGCTATGATAGATCGAGAACGACATCTTGAAGCACTGAATAACCTTAGGGCGTTTACCACTCAAATGAAACAAGACATGCTTCAGCGATTGCGGCTGGGTTATAGAAATACGTTTGCTCAAAATGCCGCCGTGCTTCCACAATTCTATATTCCACAACCTTTGGGTGTTATGGGTAGCATTCCAGAGGTTCCTCGCAGGGCCCCGTTGCTTTTAGCCCCCACCGCTGCAATCTATCGCCCTGCGGCCTATGTGGATCCACCCCGCAGCACCAGTTTGCTGCCACAGTCAAGCGATCGAGGATACAGTATCAATGTTGACGGTTTACATGGAGTATTTTCAAAGACTCCTGGTTATGTTGTACGATTCCATTCACCAGACAGCGAAGTAACGGTTGTCAAGAAGGAAAACGTAGTTAATCCGATGGCAACAGCTGGCGAATTACAGATAGAAGCAGAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2VDL8	Protein transport protein Sec23A OS=Bos taurus OX=9913 GN=SEC23A PE=2 SV=1
Q15436	Protein transport protein Sec23A OS=Homo sapiens OX=9606 GN=SEC23A PE=1 SV=2
Q5R9P3	Protein transport protein Sec23A OS=Pongo abelii OX=9601 GN=SEC23A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005212 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08033 all species →	Sec23_BS	Sec23/Sec24 beta-sandwich domain	Domain	Interproscan
PF04815 all species →	Sec23_helical	Sec23/Sec24 helical domain	Domain	Interproscan
PF04810 all species →	zf-Sec23_Sec24	Sec23/Sec24 zinc finger	Domain	Interproscan
PF04811 all species →	Sec23_trunk	Sec23/Sec24 trunk domain	Domain	Interproscan
PF00626 all species →	Gelsolin	Gelsolin repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037550 all species →	Domain	Sec23, C-terminal	Interproscan
IPR036180 all species →	Homologous_superfamily	Gelsolin-like domain superfamily	Interproscan
IPR012990 all species →	Domain	Sec23/Sec24 beta-sandwich	Interproscan
IPR029006 all species →	Homologous_superfamily	ADF-H/Gelsolin-like domain superfamily	Interproscan
IPR006900 all species →	Domain	Sec23/Sec24, helical domain	Interproscan
IPR006895 all species →	Domain	Zinc finger, Sec23/Sec24-type	Interproscan
IPR036175 all species →	Homologous_superfamily	Sec23/Sec24 helical domain superfamily	Interproscan
IPR006896 all species →	Domain	Sec23/Sec24, trunk domain	Interproscan
IPR036174 all species →	Homologous_superfamily	Zinc finger, Sec23/Sec24-type superfamily	Interproscan
IPR037364 all species →	Family	Protein transport protein Sec23	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR007123 all species →	Domain	Gelsolin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11141 all species →	PROTEIN TRANSPORT PROTEIN SEC23	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030127 all species →	Cellular Component	COPII vesicle coat	Interproscan
GO:0090114 all species →	Biological Process	COPII-coated vesicle budding	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0070971 all species →	Cellular Component	endoplasmic reticulum exit site	Interproscan
GO:0090110 all species →	Biological Process	COPII-coated vesicle cargo loading	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.1131.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.