Detailed information of evm.model.Ap13.1138 in Astrangia poculata

Genomic Location: Ap13:11728162...11747946
NR annotation: XP_015756710.1, PREDICTED: uncharacterized protein LOC107336157 [Acropora digitifera]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q61187Tumor susceptibility gene 101 protein OS=Mus musculus OX=10090 GN=Tsg101 PE=1 SV=2
Q6IRE4Tumor susceptibility gene 101 protein OS=Rattus norvegicus OX=10116 GN=Tsg101 PE=1 SV=1
Q9FFY6Protein ELC-like OS=Arabidopsis thaliana OX=3702 GN=ELCL PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000000 (this species only)
Ubiquitin familyE2|UEV|UEV · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13920
all species →
zf-C3HC4_3Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF17921
all species →
Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF05743
all species →
UEVUEV domainDomainInterproscan
PF02737
all species →
3HCDH_N3-hydroxyacyl-CoA dehydrogenase, NAD binding domainDomainInterproscan
PF05380
all species →
Peptidase_A17Pao retrotransposon peptidase FamilyInterproscan
PF18701
all species →
DUF5641Family of unknown function (DUF5641)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008883
all species →
DomainUbiquitin E2 variant, N-terminalInterproscan
IPR041588
all species →
DomainIntegrase zinc-binding domainInterproscan
IPR006176
all species →
Domain3-hydroxyacyl-CoA dehydrogenase, NAD bindingInterproscan
IPR001584
all species →
DomainIntegrase, catalytic coreInterproscan
IPR036397
all species →
Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337
all species →
Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR013083
all species →
Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR016135
all species →
Homologous_superfamilyUbiquitin-conjugating enzyme/RWD-likeInterproscan
IPR001841
all species →
DomainZinc finger, RING-typeInterproscan
IPR008042
all species →
FamilyRetrotransposon, PaoInterproscan
IPR036291
all species →
Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR040676
all species →
DomainDomain of unknown function DUF5641Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22955
all species →
RETROTRANSPOSONInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0015031
all species →
Biological Processprotein transportInterproscan
GO:0036211
all species →
Biological Processprotein modification processInterproscan
GO:0006631
all species →
Biological Processfatty acid metabolic processInterproscan
GO:0070403
all species →
Molecular FunctionNAD+ bindingInterproscan
GO:0015074
all species →
Biological ProcessDNA integrationInterproscan
GO:0003676
all species →
Molecular Functionnucleic acid bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap13.1138.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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