Genomic Location: Ap13:12335893...12359129
NR annotation: CAH3044603.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap13.1192 |
| Transcript |
| evm.model.Ap13.1192 |
| Protein |
| evm.model.Ap13.1192 |
| UniProt accession | Description |
|---|---|
| A8C756 | tRNA (32-2'-O)-methyltransferase regulator THADA OS=Mus musculus OX=10090 GN=Thada PE=1 SV=1 |
| Q6YHU6 | tRNA (32-2'-O)-methyltransferase regulator THADA OS=Homo sapiens OX=9606 GN=THADA PE=1 SV=1 |
| A8C752 | tRNA (32-2'-O)-methyltransferase regulator THADA OS=Chlorocebus aethiops OX=9534 GN=THADA PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001290 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10350 all species → | DUF2428 | THADA/TRM732, DUF2428 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR051954 all species → | Family | tRNA (32-2'-O)-methyltransferase regulator THADA | Interproscan |
| IPR019442 all species → | Domain | THADA/TRM732, DUF2428 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14387 all species → | THADA/DEATH RECEPTOR INTERACTING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0030488 all species → | Biological Process | tRNA methylation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K24169 | THADA, ARMC13; thyroid adenoma-associated protein | - | Domain-containing proteins not elsewhere classified | ko04990 | deepkoala |
Transcript abundance of evm.model.Ap13.1192 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
