Detailed information of evm.model.Ap13.1311 in Astrangia poculata

Genomic Location: Ap13:13871632...13908439
NR annotation: XP_020624941.1, HEAT repeat-containing protein 5B-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8C547HEAT repeat-containing protein 5B OS=Mus musculus OX=10090 GN=Heatr5b PE=1 SV=3
A1A5F2HEAT repeat-containing protein 5B OS=Xenopus tropicalis OX=8364 GN=heatr5b PE=2 SV=1
Q9P2D3HEAT repeat-containing protein 5B OS=Homo sapiens OX=9606 GN=HEATR5B PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003335 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20210
all species →
Laa1_Sip1_HTR5Laa1/Sip1/HEATR5 HEAT repeat regionRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011989
all species →
Homologous_superfamilyArmadillo-like helicalInterproscan
IPR016024
all species →
Homologous_superfamilyArmadillo-type foldInterproscan
IPR046837
all species →
RepeatLaa1/Sip1/HEATR5-like, HEAT repeat regionInterproscan
IPR021133
all species →
RepeatHEAT, type 2Interproscan
IPR040108
all species →
FamilyLaa1/Sip1/HEATR5Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21663
all species →
HYPOTHETICAL HEAT DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005794
all species →
Cellular ComponentGolgi apparatusInterproscan
GO:0006897
all species →
Biological ProcessendocytosisInterproscan
GO:0008104
all species →
Biological Processprotein localizationInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0030139
all species →
Cellular Componentendocytic vesicleInterproscan
GO:0042147
all species →
Biological Processretrograde transport, endosome to GolgiInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24814HEATR5, LAA1; HEAT repeat-containing protein 5-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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