Gene detail

Detailed information of evm.model.Ap13.1323 in Astrangia poculata

Genomic Location: Ap13:14064513...14066893
NR annotation: XP_020632787.1, UV-stimulated scaffold protein A-like, partial [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.1323

atggagtcggcagcggatctgtcgcttcttgaacaactgggcgaaattgttggtagtctgaccacctctggtgatccatcgttaaataatgatctcatgaagaaactaaaggccatctgtaagaaatcagatgtgtacgtgaagcacgcataccacttggttctaacgcaattgaaaaaggatcacgcagaaataaggctttcttcgttccagatcatcaatgaactctttcttcgctcccatattttcagagaaatgttgctaatcgactttcagatctttttggagctcacagtggaaacagattataaacaaccactacccccaccgaaatctgccgggaaaattctcaaggataaagcccttgaagcgatcgacagttggtatcgtaaatttgggccacactacaagaaacttgatttaggatacagttatttgaaaagggtgaaaaatgttgaatttaattctcgtacagctcgaactcaagctgaacgtcgccagactgaggagagagagcgaagaaagagcaacatcataaatggacagataattcgtgtcgagaatgagatgtctgacatggttagtgaaatggagttgtgtgcaactgaaattgagaattgcttcaagctgttgttacctcaccctgatgattatgaggtgcactgtgaagatgaaccagcctgttcttctcctcagcttgaacagatgacttataaagatagagaattcacagaagatctttgtgaaaaacaatcagttgacaataaaatggacagcaaaacaactgattttgaatcacacaaaggcgatgataatgagcggctactatcagaccatggccttggaacaaggtcatatcaattaactattaggttagacaagagtgggccacaaattaaagaaactgttgacaacagcattgtgttaaagacagttcgggagttttacaaagaaatgacacacaagcatttgccgatgattaacaagtggttatctgtgttaagtaaaggtgaagggatgcagcttaaaattcaaaaacttattgatctgaaaggaactttagaggcagcaaagagtaaattccatgagctaaaaataacaccactggttgacaatgcagaaagtgcttccaaacaaggaaaagaagacagtacaagtgatgaagatgatgatgacactgaagattttgaagatgttccagagaaagaaggcattcatttagttattcctccaaatgagagagaagaatatggtcttcaaccatcaacaacagcccagcagtcagccacagattcaagttccaaagtaaataaaacagagagtagcttcttaaaacagtttggtgctgatcctcgagagcttggggaccctacttcccgtgcaactgccctctttcaagtgaaagaccagctgtctaatgctgacagttcctctgatctcagtgaatatactaagtcaacaacagatgacaagagacagaagttacttgaacaagcaccagttgtaccatttgatatggacttgtacttctgggaagatcccagtgctggggtgcataagatggtcaagacatatcttgataacaattgggcatctaaagagcatgaaggagaatatctgataggagaccagaaagctgccagacccacaagaatggtcactttttctggtagttttcagccagtcaaatggtcatgtcgtgcacccctacccagtggaaagctttgcccgagacgggatagagttaaatgtccatttcatggaaagattataccacgagatgaaacaggcaaccctgtaaacgatgctgaagttgaatgtgagcctgctagtactccagaaggaagcagtacaagtactggtgcaaatgataaggagaaagaagattcttctgcgactgactggaaggagattcagcttgaggttgaggcagccactggtttggatttgggagggaaaaataaacgaaaaaggaaaagcaaggtaaatggtaaaacagagttaaaaggatctggtcttacagatctgaaaaagcaaaagaacacagcaagaaatcggctaggcaaacttgtacttaacaaaaaagcaatgcgacgtgttgcagatcaaatggatgccattgctacaaagcgttgtcaggacaagtttgcaaatcagtttaattatgccataaaaaagtag

Transcript

evm.model.Ap13.1323

ATGGAGTCGGCAGCGGATCTGTCGCTTCTTGAACAACTGGGCGAAATTGTTGGTAGTCTGACCACCTCTGGTGATCCATCGTTAAATAATGATCTCATGAAGAAACTAAAGGCCATCTGTAAGAAATCAGATGTGTACGTGAAGCACGCATACCACTTGGTTCTAACGCAATTGAAAAAGGATCACGCAGAAATAAGGCTTTCTTCGTTCCAGATCATCAATGAACTCTTTCTTCGCTCCCATATTTTCAGAGAAATGTTGCTAATCGACTTTCAGATCTTTTTGGAGCTCACAGTGGAAACAGATTATAAACAACCACTACCCCCACCGAAATCTGCCGGGAAAATTCTCAAGGATAAAGCCCTTGAAGCGATCGACAGTTGGTATCGTAAATTTGGGCCACACTACAAGAAACTTGATTTAGGATACAGTTATTTGAAAAGGGTGAAAAATGTTGAATTTAATTCTCGTACAGCTCGAACTCAAGCTGAACGTCGCCAGACTGAGGAGAGAGAGCGAAGAAAGAGCAACATCATAAATGGACAGATAATTCGTGTCGAGAATGAGATGTCTGACATGGTTAGTGAAATGGAGTTGTGTGCAACTGAAATTGAGAATTGCTTCAAGCTGTTGTTACCTCACCCTGATGATTATGAGGTGCACTGTGAAGATGAACCAGCCTGTTCTTCTCCTCAGCTTGAACAGATGACTTATAAAGATAGAGAATTCACAGAAGATCTTTGTGAAAAACAATCAGTTGACAATAAAATGGACAGCAAAACAACTGATTTTGAATCACACAAAGGCGATGATAATGAGCGGCTACTATCAGACCATGGCCTTGGAACAAGGTCATATCAATTAACTATTAGGTTAGACAAGAGTGGGCCACAAATTAAAGAAACTGTTGACAACAGCATTGTGTTAAAGACAGTTCGGGAGTTTTACAAAGAAATGACACACAAGCATTTGCCGATGATTAACAAGTGGTTATCTGTGTTAAGTAAAGGTGAAGGGATGCAGCTTAAAATTCAAAAACTTATTGATCTGAAAGGAACTTTAGAGGCAGCAAAGAGTAAATTCCATGAGCTAAAAATAACACCACTGGTTGACAATGCAGAAAGTGCTTCCAAACAAGGAAAAGAAGACAGTACAAGTGATGAAGATGATGATGACACTGAAGATTTTGAAGATGTTCCAGAGAAAGAAGGCATTCATTTAGTTATTCCTCCAAATGAGAGAGAAGAATATGGTCTTCAACCATCAACAACAGCCCAGCAGTCAGCCACAGATTCAAGTTCCAAAGTAAATAAAACAGAGAGTAGCTTCTTAAAACAGTTTGGTGCTGATCCTCGAGAGCTTGGGGACCCTACTTCCCGTGCAACTGCCCTCTTTCAAGTGAAAGACCAGCTGTCTAATGCTGACAGTTCCTCTGATCTCAGTGAATATACTAAGTCAACAACAGATGACAAGAGACAGAAGTTACTTGAACAAGCACCAGTTGTACCATTTGATATGGACTTGTACTTCTGGGAAGATCCCAGTGCTGGGGTGCATAAGATGGTCAAGACATATCTTGATAACAATTGGGCATCTAAAGAGCATGAAGGAGAATATCTGATAGGAGACCAGAAAGCTGCCAGACCCACAAGAATGGTCACTTTTTCTGGTAGTTTTCAGCCAGTCAAATGGTCATGTCGTGCACCCCTACCCAGTGGAAAGCTTTGCCCGAGACGGGATAGAGTTAAATGTCCATTTCATGGAAAGATTATACCACGAGATGAAACAGGCAACCCTGTAAACGATGCTGAAGTTGAATGTGAGCCTGCTAGTACTCCAGAAGGAAGCAGTACAAGTACTGGTGCAAATGATAAGGAGAAAGAAGATTCTTCTGCGACTGACTGGAAGGAGATTCAGCTTGAGGTTGAGGCAGCCACTGGTTTGGATTTGGGAGGGAAAAATAAACGAAAAAGGAAAAGCAAGGTAAATGGTAAAACAGAGTTAAAAGGATCTGGTCTTACAGATCTGAAAAAGCAAAAGAACACAGCAAGAAATCGGCTAGGCAAACTTGTACTTAACAAAAAAGCAATGCGACGTGTTGCAGATCAAATGGATGCCATTGCTACAAAGCGTTGTCAGGACAAGTTTGCAAATCAGTTTAATTATGCCATAAAAAAGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E1C760	UV-stimulated scaffold protein A OS=Gallus gallus OX=9031 GN=UVSSA PE=3 SV=1
E7EXT2	UV-stimulated scaffold protein A OS=Danio rerio OX=7955 GN=uvssa PE=2 SV=2
F7AEX0	UV-stimulated scaffold protein A OS=Xenopus tropicalis OX=8364 GN=uvssa PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007473 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20867 all species →	UVSSA_N	UVSSA N-terminal domain	Repeat	Interproscan
PF09740 all species →	DUF2043	Uncharacterized conserved protein (DUF2043)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018610 all species →	Family	UV-stimulated scaffold protein A	Interproscan
IPR049408 all species →	Repeat	UV-stimulated scaffold protein A, N-terminal alpha-solenoid repeats	Interproscan
IPR049431 all species →	Domain	UV-stimulated scaffold protein A, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28670 all species →	UV-STIMULATED SCAFFOLD PROTEIN A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000993 all species →	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0006283 all species →	Biological Process	transcription-coupled nucleotide-excision repair	Interproscan
GO:0009411 all species →	Biological Process	response to UV	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23720	UVSSA; UV-stimulated scaffold protein A	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.