Detailed information of evm.model.Ap13.1327 in Astrangia poculata

Genomic Location: Ap13:14094344...14110482
NR annotation: XP_027038867.1, protein TALPID3-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q1G7G9TALPID3 protein OS=Gallus gallus OX=9031 GN=TALPID3 PE=2 SV=2
Q9BVV6Protein TALPID3 OS=Homo sapiens OX=9606 GN=KIAA0586 PE=1 SV=4
H6D7E6Protein TALPID3 OS=Danio rerio OX=7955 GN=talpid3 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002502 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15324
all species →		TALPID3Hedgehog signalling targetFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029246
all species →		FamilyProtein TALPID3Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15721
all species →		KIAA0586 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007224
all species →		Biological Processsmoothened signaling pathwayInterproscan
GO:0005814
all species →		Cellular ComponentcentrioleInterproscan
GO:0036064
all species →		Cellular Componentciliary basal bodyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22865TALPID3, JBTS23; protein TALPID3-Cilium and associated proteinsko03037deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap13.1327 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP