Gene detail

Detailed information of evm.model.Ap13.1337 in Astrangia poculata

Genomic Location: Ap13:14201699...14204187
NR annotation: CAH1277294.1, Hypp9548 [Branchiostoma lanceolatum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.1337

atgaaagccctcgggaacatccgcctggctacatggaatgtccgcaccatgttcgagacctcaagaacaccgcaggttatcagtgagatgaggaggtaccgattggacattctggggatgagtgaatgccggtggacaggctctggacgccgagtgaacagcgatggagcagtcatcatgtactctggacacgacagtcaacacattcgcggcgtggccatcatagtctcaaaagcaaaagccaacaccttgctggaatgggagccactgagtgacaggttgatcagagcacgcttcagctctaaacactgcaatcttaccatcctgcagtgttatgctccaacaaatgacgctgacgaagaagacaaggacgactggtatgagcaattacaacaagcagtctccaaagtccctctgcatgacatgcttctgatcatgggtgatatgaatgccaaagtcggagctgacaattccgactgcgacagggctatggggaaacatggatgcggtgtgatgaacgacaatggcgaacgtctaattgacttctgcttagaaaatgattgtgtagtcggcggtaccatcttcccacacagaaacatccacaagttcacatggaagtctcctgatggttccactgtcaaccagatcgaccacatcttgatcaatggaaagtggcgcaggtcccttcatgatgttcgagtttgtcgtggtgccgatgttaacagcgatcactacctagttacagccaccatcaagctaaaactgaggaaagcagctaagtcaaaccagcacaggaaacactttgatgttgccaaactgaagtccccacccaccatcaaagagtttgcgttaagactgcagaaccgctttgccgccctggctgaagaccatgaggtttctagcattaacaccaagtgggaaaccattaataagacgtacgttgagacagccgccagtgtcttaggataccgacgtcgacagaaaaagaacaaggaatggataacacctggtacgtggaaaaagatagaagaacggaaacaactgaaagccaaggcactgagcacaaagtcactcagggtccagcagcaggtccaaaaagcctataagatgaaggacaaggaagggaagaagagcgctaggaatgacaacagagcctttgctgaagagttagcaggtgaagctgaacgtgctgctgcaaggggagagatgagcgctgtttacaagatcacaaagcgactctgtggtaaaaacatcaaccagtctgcccctgtcaaagacaaggacaataacaacctcacaacagaacgtgagcaggctgcaagatgggtacaacacttcggtgaggtatttaatcgcccagaaccagatgatcctgcagcccctccaccggcagaagaagatgttcccaatatcaacatcagtccccctactgaagctgaggtcaggcatgccatccaaaacacgaagagcgggaaagccccaggcattgattccatccatgctgaaatgctaaaagctgacctttgtacgtcaaccaaggtcctcacggacctcttcagagacatatgggagacagacacaataccagatgactggaccaaaggcctaattgtcaagattcctaagaaaggtggcctccaaaattgcgacaacgtgcggggcatcacactgctgtcaattccatccaaggttttctgcaggattcttcttgccagaatagacacagccattgacactaaattgagacaggagcaggcaggattcagaagaggccgcggatgcatagatcagatctttgctctgagaaacatcatcgagcagtgcatcgagtggaccacccctctttacatcaacttcattgacttccagaaagcgtttgacagtgtgcaccgtgacaccctatggaagatcgtgcgatcaaaacagagtccctccaaagatggtcacacttatgagctcattctaccagcagttcgaaatggtttcctgttaagtcaggggtgcgtcaaggatgtatcatctcacccatcctcttcctgctcaccatcgactggatcatgcgcacaacaacggccgacagaccccgtggcattcaatggacactcttttccaaactggaagatcttgagtttgcggatgaccttgctgctctctccaccaatcgtcatgtacatcaatgccacccctgatgtaccgattacggcagatggtgaaccacttgactttgttgaggaattcacctacctgggtagtcttgtcgcaaaggatagtgcagcagggaaggacatcaaggcaaggcttgggaaagcccgcggtgcctttacacgactccagcccgtctggagatcgaagcagtacagccttagaaccaagcttaggctatataacagcattgtcaaaccagttttgttgtatggcgccgagtgctggcgtgtggtgaagagcgatatgaactag

Transcript

evm.model.Ap13.1337

ATGAAAGCCCTCGGGAACATCCGCCTGGCTACATGGAATGTCCGCACCATGTTCGAGACCTCAAGAACACCGCAGGTTATCAGTGAGATGAGGAGGTACCGATTGGACATTCTGGGGATGAGTGAATGCCGGTGGACAGGCTCTGGACGCCGAGTGAACAGCGATGGAGCAGTCATCATGTACTCTGGACACGACAGTCAACACATTCGCGGCGTGGCCATCATAGTCTCAAAAGCAAAAGCCAACACCTTGCTGGAATGGGAGCCACTGAGTGACAGGTTGATCAGAGCACGCTTCAGCTCTAAACACTGCAATCTTACCATCCTGCAGTGTTATGCTCCAACAAATGACGCTGACGAAGAAGACAAGGACGACTGGTATGAGCAATTACAACAAGCAGTCTCCAAAGTCCCTCTGCATGACATGCTTCTGATCATGGGTGATATGAATGCCAAAGTCGGAGCTGACAATTCCGACTGCGACAGGGCTATGGGGAAACATGGATGCGGTGTGATGAACGACAATGGCGAACGTCTAATTGACTTCTGCTTAGAAAATGATTGTGTAGTCGGCGGTACCATCTTCCCACACAGAAACATCCACAAGTTCACATGGAAGTCTCCTGATGGTTCCACTGTCAACCAGATCGACCACATCTTGATCAATGGAAAGTGGCGCAGGTCCCTTCATGATGTTCGAGTTTGTCGTGGTGCCGATGTTAACAGCGATCACTACCTAGTTACAGCCACCATCAAGCTAAAACTGAGGAAAGCAGCTAAGTCAAACCAGCACAGGAAACACTTTGATGTTGCCAAACTGAAGTCCCCACCCACCATCAAAGAGTTTGCGTTAAGACTGCAGAACCGCTTTGCCGCCCTGGCTGAAGACCATGAGGTTTCTAGCATTAACACCAAGTGGGAAACCATTAATAAGACGTACGTTGAGACAGCCGCCAGTGTCTTAGGATACCGACGTCGACAGAAAAAGAACAAGGAATGGATAACACCTGGTACGTGGAAAAAGATAGAAGAACGGAAACAACTGAAAGCCAAGGCACTGAGCACAAAGTCACTCAGGGTCCAGCAGCAGGTCCAAAAAGCCTATAAGATGAAGGACAAGGAAGGGAAGAAGAGCGCTAGGAATGACAACAGAGCCTTTGCTGAAGAGTTAGCAGGTGAAGCTGAACGTGCTGCTGCAAGGGGAGAGATGAGCGCTGTTTACAAGATCACAAAGCGACTCTGTGGTAAAAACATCAACCAGTCTGCCCCTGTCAAAGACAAGGACAATAACAACCTCACAACAGAACGTGAGCAGGCTGCAAGATGGGTACAACACTTCGGTGAGGTATTTAATCGCCCAGAACCAGATGATCCTGCAGCCCCTCCACCGGCAGAAGAAGATGTTCCCAATATCAACATCAGTCCCCCTACTGAAGCTGAGGTCAGGCATGCCATCCAAAACACGAAGAGCGGGAAAGCCCCAGGCATTGATTCCATCCATGCTGAAATGCTAAAAGCTGACCTTTGTACGTCAACCAAGGTCCTCACGGACCTCTTCAGAGACATATGGGAGACAGACACAATACCAGATGACTGGACCAAAGGCCTAATTGTCAAGATTCCTAAGAAAGGTGGCCTCCAAAATTGCGACAACGTGCGGGGCATCACACTGCTGTCAATTCCATCCAAGGTTTTCTGCAGGATTCTTCTTGCCAGAATAGACACAGCCATTGACACTAAATTGAGACAGGAGCAGGCAGGATTCAGAAGAGGCCGCGGATGCATAGATCAGATCTTTGCTCTGAGAAACATCATCGAGCAGTGCATCGAGTGGACCACCCCTCTTTACATCAACTTCATTGACTTCCAGAAAGCGTTTGACAGTGTGCACCGTGACACCCTATGGAAGATCGTGCGATCAAAACAGAGTCCCTCCAAAGATGGTCACACTTATGAGCTCATTCTACCAGCAGTTCGAAATGGTTTCCTGTTAAGTCAGGGGTGCGTCAAGGATGTATCATCTCACCCATCCTCTTCCTGCTCACCATCGACTGGATCATGCGCACAACAACGGCCGACAGACCCCGTGGCATTCAATGGACACTCTTTTCCAAACTGGAAGATCTTGAGTTTGCGGATGACCTTGCTGCTCTCTCCACCAATCGTCATGTACATCAATGCCACCCCTGATGTACCGATTACGGCAGATGGTGAACCACTTGACTTTGTTGAGGAATTCACCTACCTGGGTAGTCTTGTCGCAAAGGATAGTGCAGCAGGGAAGGACATCAAGGCAAGGCTTGGGAAAGCCCGCGGTGCCTTTACACGACTCCAGCCCGTCTGGAGATCGAAGCAGTACAGCCTTAGAACCAAGCTTAGGCTATATAACAGCATTGTCAAACCAGTTTTGTTGTATGGCGCCGAGTGCTGGCGTGTGGTGAAGAGCGATATGAACTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O02751	Craniofacial development protein 2 OS=Bos taurus OX=9913 GN=CFDP2 PE=1 SV=2
Q588U8	Craniofacial development protein 2 OS=Tragulus javanicus OX=9849 GN=CFDP2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF20049 all species →	DUF6451	Domain of unknown function (DUF6451)	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR045609 all species →	Domain	Domain of unknown function DUF6451	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.1337.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.