Detailed information of evm.model.Ap13.1352 in Astrangia poculata

Genomic Location: Ap13:14318051...14325766
NR annotation: XP_020628214.1, 28S ribosomal protein S10, mitochondrial-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5SPH9Small ribosomal subunit protein uS10m OS=Danio rerio OX=7955 GN=mrps10 PE=3 SV=1
P82664Small ribosomal subunit protein uS10m OS=Homo sapiens OX=9606 GN=MRPS10 PE=1 SV=2
Q5RFM3Small ribosomal subunit protein uS10m OS=Pongo abelii OX=9601 GN=MRPS10 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001920 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00338
all species →		Ribosomal_S10Ribosomal protein S10p/S20eDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036838
all species →		Homologous_superfamilySmall ribosomal subunit protein uS10 domain superfamilyInterproscan
IPR001848
all species →		FamilySmall ribosomal subunit protein uS10Interproscan
IPR027486
all species →		DomainSmall ribosomal subunit protein uS10 domainInterproscan
IPR040055
all species →		FamilySmall ribosomal subunit protein uS10mInterproscan
IPR021109
all species →		Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13334
all species →		MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S10Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →		Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840
all species →		Cellular ComponentribosomeInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0005763
all species →		Cellular Componentmitochondrial small ribosomal subunitInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap13.1352.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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