Detailed information of evm.model.Ap13.1498 in Astrangia poculata

Genomic Location: Ap13:15988437...15997358
NR annotation: XP_020632717.1, uncharacterized protein C15orf41 homolog isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q28HL3CDAN1-interacting nuclease 1 OS=Xenopus tropicalis OX=8364 GN=cdin1 PE=2 SV=1
Q6NRW5CDAN1-interacting nuclease 1 OS=Xenopus laevis OX=8355 PE=2 SV=2
Q3U4G0CDAN1-interacting nuclease 1 OS=Mus musculus OX=10090 GN=Cdin1 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006626 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14811
all species →		TPDProtein of unknown function TPD sequence-motifFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029404
all species →		FamilyCDAN1-interacting nuclease 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31661
all species →		SIMILAR TO CDNA SEQUENCE BC052040Interproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap13.1498. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24865CDIN1; CDAN1-interacting nuclease 1-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap13.1498 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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