Genomic Location: Ap13:15997414...16001847
NR annotation: KAJ7389771.1, 3-oxo-5-alpha-steroid 4-dehydrogenase 1 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap13.1499 |
| Transcript |
| evm.model.Ap13.1499 |
| Protein |
| evm.model.Ap13.1499 |
| UniProt accession | Description |
|---|---|
| Q68FF9 | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Mus musculus OX=10090 GN=Srd5a1 PE=2 SV=2 |
| P24008 | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Rattus norvegicus OX=10116 GN=Srd5a1 PE=1 SV=2 |
| A5PJS2 | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Bos taurus OX=9913 GN=SRD5A1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004790 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02544 all species → | Steroid_dh | 3-oxo-5-alpha-steroid 4-dehydrogenase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001104 all species → | Domain | 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal | Interproscan |
| IPR016636 all species → | Family | 3-oxo-5-alpha-steroid 4-dehydrogenase | Interproscan |
| IPR039357 all species → | Family | 3-oxo-5-alpha-steroid 4-dehydrogenase/very-long-chain enoyl-CoA reductase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10556 all species → | 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006629 all species → | Biological Process | lipid metabolic process | Interproscan |
| GO:0016627 all species → | Molecular Function | oxidoreductase activity, acting on the CH-CH group of donors | Interproscan |
| GO:0003865 all species → | Molecular Function | 3-oxo-5-alpha-steroid 4-dehydrogenase activity | Interproscan |
| GO:0008202 all species → | Biological Process | steroid metabolic process | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
evm.model.Ap13.1499.Transcript abundance of evm.model.Ap13.1499 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
