Gene detail

Detailed information of evm.model.Ap13.1503 in Astrangia poculata

Genomic Location: Ap13:16021888...16034723
NR annotation: XP_020632712.1, endoplasmic reticulum membrane-associated RNA degradation protein-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.1503

atggcagcttcggaagtctcggaagcgccggagctatcaaggagtaaatctacggttaataaaatgcaggcctcagtagtggaagaaactactccacgagtccatgtgttgagaagtgtagcggaggtggaaaaggtcatctcgatgtatgaaatcgaaacgagaagtgccttcattgtctacaagaaagatgggaattttggctcaaacgagatgaaatcttccaaagtcaaagtgtactgggagaggaaaggaaaagagcatggtggggctagcattccatttgatggtgtcccatttgtacacgtgggtgagaaaattctgtggtgccaccaaggaaaggacaagaggaagaaaaagcaaacaaaagcagacaaacaaagtgatcactgttacacatcttccacacgcaagcggtcctatgtccaggtgtcaaaaaagaaagactgccccgcagcaatctacatccaacaggttgcaaagttccccaattttaaggttgagagagacactgccttttttagaaataatgcagcaaaacaggttcataaggctcttagtgagaagaaagggggccatacggagatgcttttcatactaaaattgcctcatccatctacgcacaagaaccacatcactggcagggctgcaggaataagggaaccagttgatccgatcataaagaataaaattgtggagctctcaagtcaaggtgtccgcaaagtaagtgaaatgcggcgacacttagaagcctttgtcaaaagagaattggacgttggtggtcaagcacttgaaaaaacacgccgaagattttatcctaccaataaggacatctacaatcacatgtatctagcaaaggttgcccatcggttttccacacttgaccaggagaatgtagatgcccttattgttcagtggaagaaagaatcccctgcagatgagttctttttcaggccttattgtggtggctctgaagcaatgacaaacaacagctgcataaatgatgatgacatcacaccagatgaggttcctgatcccatgccatcagcctccgagggccacactttgctgttttgccatcagacagccgagcaaagggagctgcttaagaagtacggagatcaaatgtgtctgatggatgctacatatcgcaccacaaaatatgcattaccattattctttctttgtgtgcgaacgaatgtaagataccaagtggtgggttcctttgtcattcaatatgaaaatatcctaagtattgaagaagcactacaggtcttcaagaattggaatccaacttggaagccaggattttttatggtagattttgcagaagaagaaatccaggcattagaaagagttttcccagaatccaaggtactgctatgtgacttccacagggaaaaggcgtggctagaatggacatcaaaaggtgacaatggaactgcagcggttaaggacgatgttcttagccttctgagaaacattgcacatgctggtactactgaagaagctgctgctgctgtccagactctgaagaaaagtacacactgggctgaaaatgaaaagttgagaaactggtttggcaagaaatggttgcctaacatagagcgttggtgccaagcttatcgtaatgatgactttgtttgtgctgtaaacaccaacaacggcattgaacggcagaatgagtctctcaaatatgagtacctggaaggatataagaactgctccctgagtgagatgctaactgtacttatcacacaatttgcaccagatagcttcagaaagtatcttgagctcaatgtccagtaccatgatggttaccgtggttatgatgacttgcctcagttcctagtaaatagaccccgtcaagtggttgcccatgttatgaaccgctgggaatcagatgttagccctgaacatgtcagcatgtcttccccaggtctcttcagtgtaaagagtgcaagttgcaggcagccctatgaagtacgatacggggatgacaggacacttcctcactgccagtgcacagactggaaacgcttcagactaccatgcaagcatatgtgtgcctgtatgaaagcttttcctgggcagtggggatgggagcagcttggttcaaaatacacctcaaatcccctatttaatcttgatgaaatggtcatttttggcccccctgaggaaccaaatagtaaaagaggatctacttctagtacctcggagtgcgtcccagtggaggaagacatgaacccatcagacaatgatgttgatcaatttgaacctctcttgccaagaaaagggcatggcaagtcagctcttcgccttagatgtagaaatgccctgaaggaaattacaagtctcacctttttaatcaaaaataaaaagtttcttgaatgcttggcagatgacctcaatcaggttctgagaaaagcaaaggactttgtccctcaggaaggtggaattcatgtaatcatcgaatctccgaaaaagtccaaaaagaggaaaactgttaatgtgtcaaaaggtgaacccccacagaaaaaaaaatccaacatccttgatgttaaacaggcaaagtatggccggaaaaaacatcccttcaccaacagagttggtcagcacgcagattccatgcgaaaaatgtatcaggtgcatgttccaatatcagcaacaagtaccaacaacaagtcaacaaaacgttcttcagtatcaggtactaaaaggtctgcaaagcgacccaaatcagcttcagtacagggttcccaacctgcccatgcagcctcggtaaagagctcccaacccgctcaagcagcttcagtacagggttcccaacctgcccatgcagcctcagtaaagagctcccaacccgctcaagcagcttcagtacagggttcccaacctgcccatgcagcctcggtaaagagctcccaacctgcccaagcagcttcagtacagggttcccaacctgcccatgcagcctcgctaaagagctcccaacctgcccaagcagcttcagtacagggttcccaacctgcccaagcagcttcagtacagggttcccaacctgcccatgcagcctcggtaaagagctcccaacctgcccatgcagctccagtacagggttcccaacctgcccatgcagcctcggtaaagagctcccaacccgctcaagcagcttcagtacagggttcccaacctgcccatgcagcctcgctaaagagctcccaacctgcccaagcagcttcagtacagggttcccaacctgcccatgcagcctcggtaaagagctcccaacctgcccaagcagcttcagtacagggttcccaacctgcccatgcagcctcggtaaagagctcccaacccgctcaagcagcttcagtacagggttcccaacctgcccatgcagcctcgctaaagagctcccaacctgcccaagcagcttcagtacagggttcccaacctgcccaagcagcttcagtacagggttcccaacctgcccatgcagcctcggtaaagagctcccaacctgctcaagcagcttcaaacatccctaaatcaacatctggccacacctgtattgatttcacaaaacttaattacacttccaaaatgaaacctcaatggattcctgatttgggcctttcggagaaggacaagaatatcctgttaagtgggcaaaaactcactgacaatcacatctctgctgcccagaaaatcattaaaaagcaattccctcatgttgatggtctaattgatactgttcttgtttcaaacaatgacattccctctccacctactcaagaggctttgcaaatccaccacattccaggtcactggctcatgtcaacctcatttggtggtgcagtcacagtgtatgactcatcaaatacaaccctggcacctcaattgagaaggcaactagcaagggtgtacagccctttggcaaatggagctgacaagctaattgaagtaaaagtgcaaagatgccagcaacaaattggggggaaagattgtgggttgtttgcaatagcaaacacaatagcattggcaaatggtgtggatcctgccacggtgcgatttcaacaaaccaagatgcggaaacatcttcaacagtgccttgaaaaccatactttcaccatgttcccacacagttcaaatgagtcgacatcccatagaataagaacaagaaaggaccagtgtaatgagtttattgtgactcaccaactagccctgatgaggtatgcctcactgctattagttatcactgcatctatgagcagcaagttaaatgattcaccatttcgttcaagtgaaatgaaaaaaagacctttggtgaacttgtcaacttgtgctgacaacaatctttacagtatatttcctcctttacaaccatctaatatagaagacatttctaaattatttcattcaagtttcttcattattccaagcatgcttcctttatggattctagcactggaatattttaaacaacaaagatttgacttctgtgtcatactcttgcttcctcaactagagcatggtctaaggagagtgtttgcttgtgtgaacaactgtccacacagagtactgacagcagagtctacagtgctatacacaacatttgatgagatcctttcacctattttaccagatggttcagaaaatctcctcagacaagaaataggagacagccacctggaaatgttgcttgatattcttgtgcattctgagggaccaaggattcgagaccacatcagtcatggtgaagtggatttatgtgaaatatcacagcaatcagccaatcatattttgtgcatttgtgttgcatttgcaggattgtatatctaccctgaacataaaagcggctactgcgatagtgctgttcctttagttgaaaggatctgtgaaacagcaaaagcttacaagccagtctttcaccccatttctctgttagcgaagactctgcgggaacttgctctatcactcttgaaatggcaggatttaccaaaaccatgtggtgaagaatttgacagtttggaaggtgatggcagcaaatcaactgttaagtttccagatgttgagaaagcccttcaaatgctactgacatcagtttcatcacctgctgacaatctattcaaactgtcgcaatggaattttgatttagatcaaattggcacttttgttcaaggttgtgtacaaatcttggatgctgcaccacgtcttactttgtttagacctaaaggagaaattgaggtggccctgttgcttaggagcattgtacagcatggaaatgttattttagagcagatatgtgaagcagccacagtaaaataccaacagtggaaagacaggcagctgagacagcggcagagggccaactacaaacgactgtggtcacacttgccttccatgtttgctactctacagcttatggtggttgttgtcattgcagaattaatctcacttccaacgagtggagagcaaagacacagaagcattttcatcaaattcctaaagcgatgtcttcaatgcagtgaaaacatggattctttatccagtgcctcaaaaaacaaatgggatgaatgtaatactgtaggaaagacatttgtggagagtgtcgggcattattatgctaaactaagacaagaaatggcttcatga

Transcript

evm.model.Ap13.1503

ATGGCAGCTTCGGAAGTCTCGGAAGCGCCGGAGCTATCAAGGAGTAAATCTACGGTTAATAAAATGCAGGCCTCAGTAGTGGAAGAAACTACTCCACGAGTCCATGTGTTGAGAAGTGTAGCGGAGGTGGAAAAGGTCATCTCGATGTATGAAATCGAAACGAGAAGTGCCTTCATTGTCTACAAGAAAGATGGGAATTTTGGCTCAAACGAGATGAAATCTTCCAAAGTCAAAGTGTACTGGGAGAGGAAAGGAAAAGAGCATGGTGGGGCTAGCATTCCATTTGATGGTGTCCCATTTGTACACGTGGGTGAGAAAATTCTGTGGTGCCACCAAGGAAAGGACAAGAGGAAGAAAAAGCAAACAAAAGCAGACAAACAAAGTGATCACTGTTACACATCTTCCACACGCAAGCGGTCCTATGTCCAGGTGTCAAAAAAGAAAGACTGCCCCGCAGCAATCTACATCCAACAGGTTGCAAAGTTCCCCAATTTTAAGGTTGAGAGAGACACTGCCTTTTTTAGAAATAATGCAGCAAAACAGGTTCATAAGGCTCTTAGTGAGAAGAAAGGGGGCCATACGGAGATGCTTTTCATACTAAAATTGCCTCATCCATCTACGCACAAGAACCACATCACTGGCAGGGCTGCAGGAATAAGGGAACCAGTTGATCCGATCATAAAGAATAAAATTGTGGAGCTCTCAAGTCAAGGTGTCCGCAAAGTAAGTGAAATGCGGCGACACTTAGAAGCCTTTGTCAAAAGAGAATTGGACGTTGGTGGTCAAGCACTTGAAAAAACACGCCGAAGATTTTATCCTACCAATAAGGACATCTACAATCACATGTATCTAGCAAAGGTTGCCCATCGGTTTTCCACACTTGACCAGGAGAATGTAGATGCCCTTATTGTTCAGTGGAAGAAAGAATCCCCTGCAGATGAGTTCTTTTTCAGGCCTTATTGTGGTGGCTCTGAAGCAATGACAAACAACAGCTGCATAAATGATGATGACATCACACCAGATGAGGTTCCTGATCCCATGCCATCAGCCTCCGAGGGCCACACTTTGCTGTTTTGCCATCAGACAGCCGAGCAAAGGGAGCTGCTTAAGAAGTACGGAGATCAAATGTGTCTGATGGATGCTACATATCGCACCACAAAATATGCATTACCATTATTCTTTCTTTGTGTGCGAACGAATGTAAGATACCAAGTGGTGGGTTCCTTTGTCATTCAATATGAAAATATCCTAAGTATTGAAGAAGCACTACAGGTCTTCAAGAATTGGAATCCAACTTGGAAGCCAGGATTTTTTATGGTAGATTTTGCAGAAGAAGAAATCCAGGCATTAGAAAGAGTTTTCCCAGAATCCAAGGTACTGCTATGTGACTTCCACAGGGAAAAGGCGTGGCTAGAATGGACATCAAAAGGTGACAATGGAACTGCAGCGGTTAAGGACGATGTTCTTAGCCTTCTGAGAAACATTGCACATGCTGGTACTACTGAAGAAGCTGCTGCTGCTGTCCAGACTCTGAAGAAAAGTACACACTGGGCTGAAAATGAAAAGTTGAGAAACTGGTTTGGCAAGAAATGGTTGCCTAACATAGAGCGTTGGTGCCAAGCTTATCGTAATGATGACTTTGTTTGTGCTGTAAACACCAACAACGGCATTGAACGGCAGAATGAGTCTCTCAAATATGAGTACCTGGAAGGATATAAGAACTGCTCCCTGAGTGAGATGCTAACTGTACTTATCACACAATTTGCACCAGATAGCTTCAGAAAGTATCTTGAGCTCAATGTCCAGTACCATGATGGTTACCGTGGTTATGATGACTTGCCTCAGTTCCTAGTAAATAGACCCCGTCAAGTGGTTGCCCATGTTATGAACCGCTGGGAATCAGATGTTAGCCCTGAACATGTCAGCATGTCTTCCCCAGGTCTCTTCAGTGTAAAGAGTGCAAGTTGCAGGCAGCCCTATGAAGTACGATACGGGGATGACAGGACACTTCCTCACTGCCAGTGCACAGACTGGAAACGCTTCAGACTACCATGCAAGCATATGTGTGCCTGTATGAAAGCTTTTCCTGGGCAGTGGGGATGGGAGCAGCTTGGTTCAAAATACACCTCAAATCCCCTATTTAATCTTGATGAAATGGTCATTTTTGGCCCCCCTGAGGAACCAAATAGTAAAAGAGGATCTACTTCTAGTACCTCGGAGTGCGTCCCAGTGGAGGAAGACATGAACCCATCAGACAATGATGTTGATCAATTTGAACCTCTCTTGCCAAGAAAAGGGCATGGCAAGTCAGCTCTTCGCCTTAGATGTAGAAATGCCCTGAAGGAAATTACAAGTCTCACCTTTTTAATCAAAAATAAAAAGTTTCTTGAATGCTTGGCAGATGACCTCAATCAGGTTCTGAGAAAAGCAAAGGACTTTGTCCCTCAGGAAGGTGGAATTCATGTAATCATCGAATCTCCGAAAAAGTCCAAAAAGAGGAAAACTGTTAATGTGTCAAAAGGTGAACCCCCACAGAAAAAAAAATCCAACATCCTTGATGTTAAACAGGCAAAGTATGGCCGGAAAAAACATCCCTTCACCAACAGAGTTGGTCAGCACGCAGATTCCATGCGAAAAATGTATCAGGTGCATGTTCCAATATCAGCAACAAGTACCAACAACAAGTCAACAAAACGTTCTTCAGTATCAGGTACTAAAAGGTCTGCAAAGCGACCCAAATCAGCTTCAGTACAGGGTTCCCAACCTGCCCATGCAGCCTCGGTAAAGAGCTCCCAACCCGCTCAAGCAGCTTCAGTACAGGGTTCCCAACCTGCCCATGCAGCCTCAGTAAAGAGCTCCCAACCCGCTCAAGCAGCTTCAGTACAGGGTTCCCAACCTGCCCATGCAGCCTCGGTAAAGAGCTCCCAACCTGCCCAAGCAGCTTCAGTACAGGGTTCCCAACCTGCCCATGCAGCCTCGCTAAAGAGCTCCCAACCTGCCCAAGCAGCTTCAGTACAGGGTTCCCAACCTGCCCAAGCAGCTTCAGTACAGGGTTCCCAACCTGCCCATGCAGCCTCGGTAAAGAGCTCCCAACCTGCCCATGCAGCTCCAGTACAGGGTTCCCAACCTGCCCATGCAGCCTCGGTAAAGAGCTCCCAACCCGCTCAAGCAGCTTCAGTACAGGGTTCCCAACCTGCCCATGCAGCCTCGCTAAAGAGCTCCCAACCTGCCCAAGCAGCTTCAGTACAGGGTTCCCAACCTGCCCATGCAGCCTCGGTAAAGAGCTCCCAACCTGCCCAAGCAGCTTCAGTACAGGGTTCCCAACCTGCCCATGCAGCCTCGGTAAAGAGCTCCCAACCCGCTCAAGCAGCTTCAGTACAGGGTTCCCAACCTGCCCATGCAGCCTCGCTAAAGAGCTCCCAACCTGCCCAAGCAGCTTCAGTACAGGGTTCCCAACCTGCCCAAGCAGCTTCAGTACAGGGTTCCCAACCTGCCCATGCAGCCTCGGTAAAGAGCTCCCAACCTGCTCAAGCAGCTTCAAACATCCCTAAATCAACATCTGGCCACACCTGTATTGATTTCACAAAACTTAATTACACTTCCAAAATGAAACCTCAATGGATTCCTGATTTGGGCCTTTCGGAGAAGGACAAGAATATCCTGTTAAGTGGGCAAAAACTCACTGACAATCACATCTCTGCTGCCCAGAAAATCATTAAAAAGCAATTCCCTCATGTTGATGGTCTAATTGATACTGTTCTTGTTTCAAACAATGACATTCCCTCTCCACCTACTCAAGAGGCTTTGCAAATCCACCACATTCCAGGTCACTGGCTCATGTCAACCTCATTTGGTGGTGCAGTCACAGTGTATGACTCATCAAATACAACCCTGGCACCTCAATTGAGAAGGCAACTAGCAAGGGTGTACAGCCCTTTGGCAAATGGAGCTGACAAGCTAATTGAAGTAAAAGTGCAAAGATGCCAGCAACAAATTGGGGGGAAAGATTGTGGGTTGTTTGCAATAGCAAACACAATAGCATTGGCAAATGGTGTGGATCCTGCCACGGTGCGATTTCAACAAACCAAGATGCGGAAACATCTTCAACAGTGCCTTGAAAACCATACTTTCACCATGTTCCCACACAGTTCAAATGAGTCGACATCCCATAGAATAAGAACAAGAAAGGACCAGTGTAATGAGTTTATTGTGACTCACCAACTAGCCCTGATGAGGTATGCCTCACTGCTATTAGTTATCACTGCATCTATGAGCAGCAAGTTAAATGATTCACCATTTCGTTCAAGTGAAATGAAAAAAAGACCTTTGGTGAACTTGTCAACTTGTGCTGACAACAATCTTTACAGTATATTTCCTCCTTTACAACCATCTAATATAGAAGACATTTCTAAATTATTTCATTCAAGTTTCTTCATTATTCCAAGCATGCTTCCTTTATGGATTCTAGCACTGGAATATTTTAAACAACAAAGATTTGACTTCTGTGTCATACTCTTGCTTCCTCAACTAGAGCATGGTCTAAGGAGAGTGTTTGCTTGTGTGAACAACTGTCCACACAGAGTACTGACAGCAGAGTCTACAGTGCTATACACAACATTTGATGAGATCCTTTCACCTATTTTACCAGATGGTTCAGAAAATCTCCTCAGACAAGAAATAGGAGACAGCCACCTGGAAATGTTGCTTGATATTCTTGTGCATTCTGAGGGACCAAGGATTCGAGACCACATCAGTCATGGTGAAGTGGATTTATGTGAAATATCACAGCAATCAGCCAATCATATTTTGTGCATTTGTGTTGCATTTGCAGGATTGTATATCTACCCTGAACATAAAAGCGGCTACTGCGATAGTGCTGTTCCTTTAGTTGAAAGGATCTGTGAAACAGCAAAAGCTTACAAGCCAGTCTTTCACCCCATTTCTCTGTTAGCGAAGACTCTGCGGGAACTTGCTCTATCACTCTTGAAATGGCAGGATTTACCAAAACCATGTGGTGAAGAATTTGACAGTTTGGAAGGTGATGGCAGCAAATCAACTGTTAAGTTTCCAGATGTTGAGAAAGCCCTTCAAATGCTACTGACATCAGTTTCATCACCTGCTGACAATCTATTCAAACTGTCGCAATGGAATTTTGATTTAGATCAAATTGGCACTTTTGTTCAAGGTTGTGTACAAATCTTGGATGCTGCACCACGTCTTACTTTGTTTAGACCTAAAGGAGAAATTGAGGTGGCCCTGTTGCTTAGGAGCATTGTACAGCATGGAAATGTTATTTTAGAGCAGATATGTGAAGCAGCCACAGTAAAATACCAACAGTGGAAAGACAGGCAGCTGAGACAGCGGCAGAGGGCCAACTACAAACGACTGTGGTCACACTTGCCTTCCATGTTTGCTACTCTACAGCTTATGGTGGTTGTTGTCATTGCAGAATTAATCTCACTTCCAACGAGTGGAGAGCAAAGACACAGAAGCATTTTCATCAAATTCCTAAAGCGATGTCTTCAATGCAGTGAAAACATGGATTCTTTATCCAGTGCCTCAAAAAACAAATGGGATGAATGTAATACTGTAGGAAAGACATTTGTGGAGAGTGTCGGGCATTATTATGCTAAACTAAGACAAGAAATGGCTTCATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5T6L9	Endoplasmic reticulum membrane-associated RNA degradation protein OS=Homo sapiens OX=9606 GN=ERMARD PE=1 SV=1
Q3B8R1	Endoplasmic reticulum membrane-associated RNA degradation protein OS=Rattus norvegicus OX=10116 GN=Ermard PE=2 SV=2
Q4R6F2	Endoplasmic reticulum membrane-associated RNA degradation protein (Fragment) OS=Macaca fascicularis OX=9541 GN=ERMARD PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000144 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15299 all species →	ALS2CR8	Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8	Family	Interproscan
PF21056 all species →	ZSWIM1-3_RNaseH-like	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR007527 all species →	Domain	Zinc finger, SWIM-type	Interproscan
IPR029309 all species →	Family	Calcium-responsive transcription factor	Interproscan
IPR048324 all species →	Domain	ZSWIM1/3, RNaseH-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47456 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.1503.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.