Genomic Location: Ap13:16039662...16046148
NR annotation: XP_020632714.1, glycerophosphodiester phosphodiesterase GDPD5-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap13.1504 |
| Transcript |
| evm.model.Ap13.1504 |
| Protein |
| evm.model.Ap13.1504 |
| UniProt accession | Description |
|---|---|
| Q9SD81 | Glycerophosphodiester phosphodiesterase GDPD6 OS=Arabidopsis thaliana OX=3702 GN=GDPD6 PE=2 SV=1 |
| Q9C907 | Glycerophosphodiester phosphodiesterase GDPD5 OS=Arabidopsis thaliana OX=3702 GN=GDPD5 PE=2 SV=1 |
| P09394 | Glycerophosphodiester phosphodiesterase, periplasmic OS=Escherichia coli (strain K12) OX=83333 GN=glpQ PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010896 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03009 all species → | GDPD | Glycerophosphoryl diester phosphodiesterase family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017946 all species → | Homologous_superfamily | PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily | Interproscan |
| IPR030395 all species → | Domain | Glycerophosphodiester phosphodiesterase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43620 all species → | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008889 all species → | Molecular Function | glycerophosphodiester phosphodiesterase activity | Interproscan |
| GO:0006629 all species → | Biological Process | lipid metabolic process | Interproscan |
| GO:0008081 all species → | Molecular Function | phosphoric diester hydrolase activity | Interproscan |
evm.model.Ap13.1504.Transcript abundance of evm.model.Ap13.1504 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
