Gene detail

Detailed information of evm.model.Ap13.1526 in Astrangia poculata

Genomic Location: Ap13:16248494...16259877
NR annotation: CAH3141002.1, unnamed protein product [Porites lobata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.1526

atgataagaaagaatagtgtaacgtgcactcttcctggcatcaatgatcaaactgtcaaactacgaacactgagacccatcgttctatcaaacattgaacatgttgatcacagttatgaaattgtggcgtcaatccctctttcaagtatctgtgaagtaaagaagttttccaggaagaacttgccaaaggacaagcagatgtttctgatggatgggtttgaaattctctgtagcaacgtccagtcacataggttctgccttggtcttcaaagtactcttgatgctgaatcagtcataaaaataattcttcaaaattcaaaagcagagttttccaagttatttgccttcattcataaaagtgccattctgctgcccaaatcatgtacaattttggatagaaaagatgctccaaacttctacaaatttgaattggaatgtgacagactcaagctatttcttacaggaaactggaaaatttccagagaaaagcagcccattcaatatccagaaaaaacagttgttcctatttcaatgacaagtgatgatttaaatgaagtcgcaaattttcacagaggaagttgtctaccagcagtttgttggagacatgttgaaagtggtgcagtcttgctaaggtcatccacagcattgttcagaagaggtttaaaagactcaagatgccaagccgacgagaagtatcttgtagcagtcacctcatgcagtgaggcatcaactaacaaacttgtggtctttacagagcaattgagacagtctgggggtggtatactgaattcatcacaacagcaagtgacgcagatgacaggacagcttactccagaggaaggcgagactttctattatcccaacaccaagtttgtttatggcgaaggaatcccggacttcaaagctgtgaagcagagtgcttacaaactacaagcagttctgtcgagtagaaatgatgacagtaaatggctttcctctctggatgattctgattggctgagtcaagtcagtgagctgctccaaactgccactcaaatctcggttgctatggagtgtgacaagtcatcagttctgatcagctatgaagatggtattgacagaacggctcaggtatctagtctgtctcagttgttactggatccgtactacagaacagtggctggctttcaggttttgattcagaaggagtggctgtcatttggccacaagttttatgaccgcaccctcctctcacagacccaagatgaacacagtcctatgtttctccagtggctggattgtgtttggcagacgctgttagaagaatattcccgattattgcaccgcctggcagatgtggattcggaagattcctcctccaagatgtctttttacacagccactctccaccgcgccttgcagaaaaagaattcaagcgatcatctagggtattttgatcattgtgaaagcagcggttctcttgataacgctttagaagcatccgggacttggccaagtgtggcgtccaacttgtctgaagaggacccggatggtttgacgtcatctatggcgtcattaactctctcgaggcgtatgactcgcagtcggtcgttagatgacatgttagatattgatatgaggcaaaggagagcttcgagaaagacttctcttaaacgtcgtgttggaagcagtaaattctacacggaacagatgctaacgcgtttaaacacggagtctagcaatgatgtgaggaatcgtcccatctcggagaaatacagcagtcttaaggattacctcgacagcacaggtatcgatcaccaatccgagaaggacatcagagtgtcagaataccagtgctgcggttacatggtcaaacaaggacaggttcgaaggagttggaagaagcgatggtttgtgcttgacctcacgaagaaatacctcgcctactttgaaacggaaaaggcggacatccccaagggagccatcagctgtaaggccatcacccgtgtatacgagcaccggaattgcggcaagagcaaacgtcagttcctgttttgtgtggacacaccagaccgtacatacacaatgtacgcaccgaccgagcaaagtatgaacatttggatgacatgcttaacgatatcaccgactgctattgaacttcagagagatcaaacgtag

Transcript

evm.model.Ap13.1526

ATGATAAGAAAGAATAGTGTAACGTGCACTCTTCCTGGCATCAATGATCAAACTGTCAAACTACGAACACTGAGACCCATCGTTCTATCAAACATTGAACATGTTGATCACAGTTATGAAATTGTGGCGTCAATCCCTCTTTCAAGTATCTGTGAAGTAAAGAAGTTTTCCAGGAAGAACTTGCCAAAGGACAAGCAGATGTTTCTGATGGATGGGTTTGAAATTCTCTGTAGCAACGTCCAGTCACATAGGTTCTGCCTTGGTCTTCAAAGTACTCTTGATGCTGAATCAGTCATAAAAATAATTCTTCAAAATTCAAAAGCAGAGTTTTCCAAGTTATTTGCCTTCATTCATAAAAGTGCCATTCTGCTGCCCAAATCATGTACAATTTTGGATAGAAAAGATGCTCCAAACTTCTACAAATTTGAATTGGAATGTGACAGACTCAAGCTATTTCTTACAGGAAACTGGAAAATTTCCAGAGAAAAGCAGCCCATTCAATATCCAGAAAAAACAGTTGTTCCTATTTCAATGACAAGTGATGATTTAAATGAAGTCGCAAATTTTCACAGAGGAAGTTGTCTACCAGCAGTTTGTTGGAGACATGTTGAAAGTGGTGCAGTCTTGCTAAGGTCATCCACAGCATTGTTCAGAAGAGGTTTAAAAGACTCAAGATGCCAAGCCGACGAGAAGTATCTTGTAGCAGTCACCTCATGCAGTGAGGCATCAACTAACAAACTTGTGGTCTTTACAGAGCAATTGAGACAGTCTGGGGGTGGTATACTGAATTCATCACAACAGCAAGTGACGCAGATGACAGGACAGCTTACTCCAGAGGAAGGCGAGACTTTCTATTATCCCAACACCAAGTTTGTTTATGGCGAAGGAATCCCGGACTTCAAAGCTGTGAAGCAGAGTGCTTACAAACTACAAGCAGTTCTGTCGAGTAGAAATGATGACAGTAAATGGCTTTCCTCTCTGGATGATTCTGATTGGCTGAGTCAAGTCAGTGAGCTGCTCCAAACTGCCACTCAAATCTCGGTTGCTATGGAGTGTGACAAGTCATCAGTTCTGATCAGCTATGAAGATGGTATTGACAGAACGGCTCAGGTATCTAGTCTGTCTCAGTTGTTACTGGATCCGTACTACAGAACAGTGGCTGGCTTTCAGGTTTTGATTCAGAAGGAGTGGCTGTCATTTGGCCACAAGTTTTATGACCGCACCCTCCTCTCACAGACCCAAGATGAACACAGTCCTATGTTTCTCCAGTGGCTGGATTGTGTTTGGCAGACGCTGTTAGAAGAATATTCCCGATTATTGCACCGCCTGGCAGATGTGGATTCGGAAGATTCCTCCTCCAAGATGTCTTTTTACACAGCCACTCTCCACCGCGCCTTGCAGAAAAAGAATTCAAGCGATCATCTAGGGTATTTTGATCATTGTGAAAGCAGCGGTTCTCTTGATAACGCTTTAGAAGCATCCGGGACTTGGCCAAGTGTGGCGTCCAACTTGTCTGAAGAGGACCCGGATGGTTTGACGTCATCTATGGCGTCATTAACTCTCTCGAGGCGTATGACTCGCAGTCGGTCGTTAGATGACATGTTAGATATTGATATGAGGCAAAGGAGAGCTTCGAGAAAGACTTCTCTTAAACGTCGTGTTGGAAGCAGTAAATTCTACACGGAACAGATGCTAACGCGTTTAAACACGGAGTCTAGCAATGATGTGAGGAATCGTCCCATCTCGGAGAAATACAGCAGTCTTAAGGATTACCTCGACAGCACAGGTATCGATCACCAATCCGAGAAGGACATCAGAGTGTCAGAATACCAGTGCTGCGGTTACATGGTCAAACAAGGACAGGTTCGAAGGAGTTGGAAGAAGCGATGGTTTGTGCTTGACCTCACGAAGAAATACCTCGCCTACTTTGAAACGGAAAAGGCGGACATCCCCAAGGGAGCCATCAGCTGTAAGGCCATCACCCGTGTATACGAGCACCGGAATTGCGGCAAGAGCAAACGTCAGTTCCTGTTTTGTGTGGACACACCAGACCGTACATACACAATGTACGCACCGACCGAGCAAAGTATGAACATTTGGATGACATGCTTAACGATATCACCGACTGCTATTGAACTTCAGAGAGATCAAACGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13613	Phosphatidylinositol-3-phosphate phosphatase MTMR1 OS=Homo sapiens OX=9606 GN=MTMR1 PE=1 SV=4
Q9Z2C4	Phosphatidylinositol-3-phosphate phosphatase MTMR1 OS=Mus musculus OX=10090 GN=Mtmr1 PE=1 SV=1
A0JMK5	Phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR2 OS=Danio rerio OX=7955 GN=mtmr2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003563 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06602 all species →	Myotub-related	Myotubularin-like phosphatase domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR010569 all species →	Domain	Myotubularin-like, phosphatase domain	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR030564 all species →	Family	Myotubularin family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10807 all species →	MYOTUBULARIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004438 all species →	Molecular Function	phosphatidylinositol-3-phosphate phosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.1526.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.