Gene detail

Detailed information of evm.model.Ap13.1582 in Astrangia poculata

Genomic Location: Ap13:16771137...16805969
NR annotation: XP_027039920.1, uncharacterized protein LOC113668239 isoform X2 [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.1582

atggaagacagctcactgaacgcatggcctaccatgcctgaacgctttgccgaacaccttgtcagcggtttctctctggcagttttggagcagattacaaagcttttagactctgctcaggagcctaagccagatccccggagcctacagaacaacatagaatccctgagaaaggagaaagaatactggaagagcttcatggaagttgacgaatggaacagagatacggttcgtgagattgaaacagcatggaggaaaagatctcagggcgaccaaccaacggtcttaccaccgctagagcaacttgctgaaaacgtaaaagaacctgtcgaaaagccacctcctcacgcacgacccctcaggcggtcacatacagatcctacagacctactctgggtattccgcagacgagcttccttgttaacaaaacgagttcatcaagaactcgtttcgaatcaaagtgatggatgcaatgagccctatcgtgttgaaaatgatggcaagagctaccagacaaagccaggaacaagcgagggtctcatggacaagacacgcagctcgcgttcagacagtccctcttcacaagacagtcaccccaaagaactcaccatggaggacagagtaagagagtcgagcagtgacagcgagacaagagatgacactccttatgagtggactgccatgccagtgaagcatcatgacgaacctcgacgcaagatctctgcgcctgcgtatcgccctggtcggcgggaatccgtagtggcagtacatgcgaatcgaagagcaagtgtagcggcggccccaagacgcataaacaggagaggaagtgaggcaccagccctcacagtcatagcacgacggcgaaactcgcaatctcatctcgcatatccagtggggataaggagaaaaaattcaagggccgccggtatagataatcagctcagtatacaagccaaagctaagcatgaaatgctagcaaaccttgtcctccctgcattcgtcgaccaacctccaagaacgagagaaagaagaaacacttttaccttccaggccccaagtatgcgaacaaagaacgacgaaaagagatatcaggttgccaaggagatcttggaaacagagaagaaatatctttcctgcctaagaactcttaaagagattgatgttttacgaatttattccaattacgtgaacaactttcccaaggcgattggcgtaataaacaagagttcaagaggatctcaaaaatttaggaaatttttacagaattgttcatcaaagtcagaatgtgaaggactagatttacctgcatttcttcttactccaattcaaagacttccacgatatgttcttcttcttaggcaactttcaaagtacaccgatgctggacatcctgacagtttccatatcgagaacgcgttggaaactatgaaacagatgattaacattctaaacgattccattcaaaactcttgcaagcttgccaacaactctcagattcgacggagctttaaaagaaagtccttgaggaagaagggaaaagagcttcaaaagaacagacaaaattcacaggacaatgatagggcatctatgggaaacagcagcgtatcaaccctgtcgatggagtctggtggaccaggaaacacttgctcgcaggatggatcacctgagcgtatcacgtctcaagcagttatttcagacgagagtgggtcccccacactgcatcgcgctaatggatttgacgagaggattacggacggaaggagatctcggcctgtcagtaccggagacatggaaacattctatgaacgagacgcccatgaggagtttgctgccatcgaagaagaagacagtgaggatctaaaagacagcaagaactcaggacaaaacgtttttcgaatggctgctgacagtttaataagaaactggcaacgaaggtccaaaaaatggcggcggtcgactgaggaaccgttcaagagggagagcctagatgaattggatacctcctcaaaagaaaatgaaaacgataaccatcagaattgtattgagcaaagaacttctgaactaggacaagagaatactgaagatgaaaatggaaatgtcagactggaagaaaaaaatgctacaaagggtattacgccaccaagtactccatccagaaaatgtgttaggaaaaatgctgttacatctcctacaagacctcgtccagtttcgttgggatatctctctaatttacaattaaaagagcacgagaacaaaataaaagacaaggtgttgtcggacccaagtttgacaaaagaaaagaataaatcacttgagaatccttcagacgtttggatacctaggcatcaatcgctcttagcaaggaggagaccatctgacaacgcgcgacattcagtttgttcgaggacctccagtgtattttccggagagtcttcacccttatctggtagcaagaagagtttgccgcgtatttctcaagaaagtctagcagattctggagtttctgaaacgcctggaagctcaccttctaacacgctcaatagcaggactcgtaaaacttcaaaggagaaaagggacaagcttagtttctcgctcacaaacgtttctggcacaagtgaacctaaaagaaaactttctcagttaaatagaagaagttggggtgactgggtatccgctgaaatggaaaacactcccgacgaggtttctgttgaaagagacgacaatgttgacgaagtcagcgttaaaaataagcgcaagtttaaagatgtggtgaaacagttcttttcctccaagaaaaaaaatggtcaatcaagtccatcattccccggagaaactaccacaaacgcgcattgctctactaagaaatctccaaagccaacaacggcagaagttggtgaaaagatctccacggtttaa

Transcript

evm.model.Ap13.1582

ATGGAAGACAGCTCACTGAACGCATGGCCTACCATGCCTGAACGCTTTGCCGAACACCTTGTCAGCGGTTTCTCTCTGGCAGTTTTGGAGCAGATTACAAAGCTTTTAGACTCTGCTCAGGAGCCTAAGCCAGATCCCCGGAGCCTACAGAACAACATAGAATCCCTGAGAAAGGAGAAAGAATACTGGAAGAGCTTCATGGAAGTTGACGAATGGAACAGAGATACGGTTCGTGAGATTGAAACAGCATGGAGGAAAAGATCTCAGGGCGACCAACCAACGGTCTTACCACCGCTAGAGCAACTTGCTGAAAACGTAAAAGAACCTGTCGAAAAGCCACCTCCTCACGCACGACCCCTCAGGCGGTCACATACAGATCCTACAGACCTACTCTGGGTATTCCGCAGACGAGCTTCCTTGTTAACAAAACGAGTTCATCAAGAACTCGTTTCGAATCAAAGTGATGGATGCAATGAGCCCTATCGTGTTGAAAATGATGGCAAGAGCTACCAGACAAAGCCAGGAACAAGCGAGGGTCTCATGGACAAGACACGCAGCTCGCGTTCAGACAGTCCCTCTTCACAAGACAGTCACCCCAAAGAACTCACCATGGAGGACAGAGTAAGAGAGTCGAGCAGTGACAGCGAGACAAGAGATGACACTCCTTATGAGTGGACTGCCATGCCAGTGAAGCATCATGACGAACCTCGACGCAAGATCTCTGCGCCTGCGTATCGCCCTGGTCGGCGGGAATCCGTAGTGGCAGTACATGCGAATCGAAGAGCAAGTGTAGCGGCGGCCCCAAGACGCATAAACAGGAGAGGAAGTGAGGCACCAGCCCTCACAGTCATAGCACGACGGCGAAACTCGCAATCTCATCTCGCATATCCAGTGGGGATAAGGAGAAAAAATTCAAGGGCCGCCGGTATAGATAATCAGCTCAGTATACAAGCCAAAGCTAAGCATGAAATGCTAGCAAACCTTGTCCTCCCTGCATTCGTCGACCAACCTCCAAGAACGAGAGAAAGAAGAAACACTTTTACCTTCCAGGCCCCAAGTATGCGAACAAAGAACGACGAAAAGAGATATCAGGTTGCCAAGGAGATCTTGGAAACAGAGAAGAAATATCTTTCCTGCCTAAGAACTCTTAAAGAGATTGATGTTTTACGAATTTATTCCAATTACGTGAACAACTTTCCCAAGGCGATTGGCGTAATAAACAAGAGTTCAAGAGGATCTCAAAAATTTAGGAAATTTTTACAGAATTGTTCATCAAAGTCAGAATGTGAAGGACTAGATTTACCTGCATTTCTTCTTACTCCAATTCAAAGACTTCCACGATATGTTCTTCTTCTTAGGCAACTTTCAAAGTACACCGATGCTGGACATCCTGACAGTTTCCATATCGAGAACGCGTTGGAAACTATGAAACAGATGATTAACATTCTAAACGATTCCATTCAAAACTCTTGCAAGCTTGCCAACAACTCTCAGATTCGACGGAGCTTTAAAAGAAAGTCCTTGAGGAAGAAGGGAAAAGAGCTTCAAAAGAACAGACAAAATTCACAGGACAATGATAGGGCATCTATGGGAAACAGCAGCGTATCAACCCTGTCGATGGAGTCTGGTGGACCAGGAAACACTTGCTCGCAGGATGGATCACCTGAGCGTATCACGTCTCAAGCAGTTATTTCAGACGAGAGTGGGTCCCCCACACTGCATCGCGCTAATGGATTTGACGAGAGGATTACGGACGGAAGGAGATCTCGGCCTGTCAGTACCGGAGACATGGAAACATTCTATGAACGAGACGCCCATGAGGAGTTTGCTGCCATCGAAGAAGAAGACAGTGAGGATCTAAAAGACAGCAAGAACTCAGGACAAAACGTTTTTCGAATGGCTGCTGACAGTTTAATAAGAAACTGGCAACGAAGGTCCAAAAAATGGCGGCGGTCGACTGAGGAACCGTTCAAGAGGGAGAGCCTAGATGAATTGGATACCTCCTCAAAAGAAAATGAAAACGATAACCATCAGAATTGTATTGAGCAAAGAACTTCTGAACTAGGACAAGAGAATACTGAAGATGAAAATGGAAATGTCAGACTGGAAGAAAAAAATGCTACAAAGGGTATTACGCCACCAAGTACTCCATCCAGAAAATGTGTTAGGAAAAATGCTGTTACATCTCCTACAAGACCTCGTCCAGTTTCGTTGGGATATCTCTCTAATTTACAATTAAAAGAGCACGAGAACAAAATAAAAGACAAGGTGTTGTCGGACCCAAGTTTGACAAAAGAAAAGAATAAATCACTTGAGAATCCTTCAGACGTTTGGATACCTAGGCATCAATCGCTCTTAGCAAGGAGGAGACCATCTGACAACGCGCGACATTCAGTTTGTTCGAGGACCTCCAGTGTATTTTCCGGAGAGTCTTCACCCTTATCTGGTAGCAAGAAGAGTTTGCCGCGTATTTCTCAAGAAAGTCTAGCAGATTCTGGAGTTTCTGAAACGCCTGGAAGCTCACCTTCTAACACGCTCAATAGCAGGACTCGTAAAACTTCAAAGGAGAAAAGGGACAAGCTTAGTTTCTCGCTCACAAACGTTTCTGGCACAAGTGAACCTAAAAGAAAACTTTCTCAGTTAAATAGAAGAAGTTGGGGTGACTGGGTATCCGCTGAAATGGAAAACACTCCCGACGAGGTTTCTGTTGAAAGAGACGACAATGTTGACGAAGTCAGCGTTAAAAATAAGCGCAAGTTTAAAGATGTGGTGAAACAGTTCTTTTCCTCCAAGAAAAAAAATGGTCAATCAAGTCCATCATTCCCCGGAGAAACTACCACAAACGCGCATTGCTCTACTAAGAAATCTCCAAAGCCAACAACGGCAGAAGTTGGTGAAAAGATCTCCACGGTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1ZXH8	Guanine exchange factor for Rac 30 OS=Dictyostelium discoideum OX=44689 GN=gxcDD PE=4 SV=3
Q55E26	Rac guanine nucleotide exchange factor B OS=Dictyostelium discoideum OX=44689 GN=gxcB PE=2 SV=1
Q553D3	Rac guanine nucleotide exchange factor JJ OS=Dictyostelium discoideum OX=44689 GN=gxcJJ PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001547 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR051092 all species →	Family	FYVE, RhoGEF and PH domain-containing	Interproscan
IPR001331 all species →	Conserved_site	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12673 all species →	FACIOGENITAL DYSPLASIA PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005089 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.1582.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.