Gene detail

Detailed information of evm.model.Ap13.1634_evm.model.Ap13.1635 in Astrangia poculata

Genomic Location: Ap13:17354242...17375257
NR annotation: XP_020607686.1, dentin sialophosphoprotein-like isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.1634_evm.model.Ap13.1635

atgaagacagctgcagactgggctcttctgagtcctgatggcaccttccacaagctgtctgaaccgaacttttttgtaggcagggaagaccagatggacttaatccttaagtcaaggagtgtggataaacaacatgcagtaatcaccgttaatactgagaatggagaacacaagttgcatgaccttggaactctgaatggaacatttgtgaatgaagtcagagtaaaacagtatccagttgatctaaagctgagagacaacattcgatttggatatgactcaaacactttccgtgtagagctctgccctcacagacagtcattttaccacaatgaaaagaactcagacagacaacattacaatggaaatgacaattcattggaaacaatttgggaggctaacaaaagccagcctccagctcctgaaaggaaactttccatccagtctactcaacaagttaatccagatgaagatgatcgtcgatcaggaacaccagaccaagagattctgatgtaccatggtgtacattcacctcattcaccccacactcagttccacccagcctacccacattacccctacatggcaccaatgtatcaccacccaccccctgtgatgtgtcactgtccttcgtgtactggacacaggcctcctgtccactccccccatggtactgcacctggtagctttgttcatcaccagatgggacctcatgcaagctggacacatggatcccctgcagcatttcatgtcagaccaagactgcagagacccatgtcagcgcctggcgagaaacttgaaatgctagtcaagggcagccccctgtatggtcagcccccatggtgggggtgggggtcctcagacgacgaaatttacaactacccaaacactgcgaccattctggagccgggaggtgacagtcagactgtagcaggccaacaggctctgtctcttaaaaagaagaaaattactaagaaagacgcgctggaaatggcacaaagaaggcacagcactggcactgtatctgtgttatcagagtctaaggcgcggattgttacaacaagaacttctaatacgacatatgaccctgagcaggagagagccatcaaacagcgagaagaatttgtcgtgtttcagaagaaatcttctctgccgagtccaggttatagcgagcagttgtctcctgtgtttgaaaactcgactagtaaagactgggaaatgccaagtgcgcgaaacgaacaagcaaagcgtgactctagttcgtcaacggagaattctccggatgatgggagtgaggggcattcaagactcgggtcttcctacgagattccttttattccggactacgatgaagttcctgaaagacctgtaagtctaaaaagtgagaaaggaaaagtagcggcacatgatgttgcgcggaaaggttctgcggagaagcaagatcgggtcgtaaggaaaaagcccaccagtaaaattaaaaagagagtcactgcttcagatgcgccggcaaagaatggaaaactaacatcaagttccagaaagcattcaagcgacaccagtgagtcagagtacgagccatcctctcacccctcccggcgatcgggtgtggtcgctgtaggtacggccacttcctccagtggggtgtttggtctgacggaggtgagccttggtgatcaggacaggcgagagacgctttctcctgctcttctaccaagctgggtacagcagtgggcgaacagtactgacaatcggggcagcgctgcagttcaaccgatcgaggtgtttggttcttctgaagattctacagcgagtagtgtgatgtcttcctcgagtcaaattccagttcctgttgaaccggacaactcagaaaataacgccaagcctgtcaagagcgtttccccgccgagtctcagcaggccgaagtcggcatcatcaagatcaaacacgccgggtgtgatgcgaagccagagcttatcatctgccaatctgtcctcttctccgaagccttccgcctcccccagagtctcccggagtaagacaatgactgctgccgtacggcgctcttacccggcggctacttcaagcgagtcagacaaaaaaccaagcgatagtgtacggagaagaggaccagtaagcagcacgtcggacgatagtgatgtggaatccagcgacgcgtcgcaaacaaggcacataaaagatttccggagaaggagtgatgaatctgacaggagaggggtgcagcttattcctgaaaaggaaggaaagagaccgttttctgcccctcgtcccaacaagactgctatgctaagggcgcataatagccgagaagccgtcaagaatagcggcgttaaaagtaaaactccgatttcggcgaaagctagggctacaaagagctcaccgccgagcaattccggaaacggaagtggtggagctgtcaatcacacgagcgattcagcaagagtgtggagtcccagtacgaaaaggtcgagcaagtcctccacgggcgacgataaccgtgaggtcggggagaatagtattaagactgatggtgatgatttatgcagctcaccagcaaatgacggcactcaggaggcggttgatgacgtcttcacttcgggcccagtccgacctctgccagagtcacttcagatgaagcgagatgatacagtgaacaaaacattcgtgcttgatgaaggcaacgaggacgtttcagtgtcgtctcctgaagacagctccatgcaagcctgggaaggcaaggtctccaacactgaacatgagcttgaatctaaagacctcctggacaagagcactctaccatcttcaccgtcaagtaaagagccaaaggagataaaactagaatccacgaacacgagggggattagcctgcgcagcaagctcattccttttgccccatttcttgagactcagtcgtacacaccgcccgtctctgaccagccttttgagccaccaagcgactctgcggagtcagcggactcgtcgggttcccgatcttccacaggagagggaagaccgatgtcgcctgagtcagttgtctctatggcaactggtacctccccctcgcctcctttgactccgagttctgcagccaggaaaatgtttgatttcaaggggggagctgcatcttcacaaagccgaagacagtggggtgtgacagacaaggtgccgacacttattgactttattagtgttttctcgtag

Transcript

evm.model.Ap13.1634_evm.model.Ap13.1635

TTCTTCGAGAAGAACCTGAACGCGTGGGATGTCTTCGAAAGGCTTCGTTTGTTGTTGTTAGTGATGAAGACAGCTGCAGACTGGGCTCTTCTGAGTCCTGATGGCACCTTCCACAAGCTGTCTGAACCGAACTTTTTTGTAGGCAGGGAAGACCAGATGGACTTAATCCTTAAGTCAAGGAGTGTGGATAAACAACATGCAGTAATCACCGTTAATACTGAGAATGGAGAACACAAGTTGCATGACCTTGGAACTCTGAATGGAACATTTGTGAATGAAGTCAGAGTAAAACAGTATCCAGTTGATCTAAAGCTGAGAGACAACATTCGATTTGGATATGACTCAAACACTTTCCGTGTAGAGCTCTGCCCTCACAGACAGTCATTTTACCACAATGAAAAGAACTCAGACAGACAACATTACAATGGAAATGACAATTCATTGGAAACAATTTGGGAGGCTAACAAAAGCCAGCCTCCAGCTCCTGAAAGGAAACTTTCCATCCAGTCTACTCAACAAGTTAATCCAGATGAAGATGATCGTCGATCAGGAACACCAGACCAAGAGATTCTGATGTACCATGGTGTACATTCACCTCATTCACCCCACACTCAGTTCCACCCAGCCTACCCACATTACCCCTACATGGCACCAATGTATCACCACCCACCCCCTGTGATGTGTCACTGTCCTTCGTGTACTGGACACAGGCCTCCTGTCCACTCCCCCCATGGTACTGCACCTGGTAGCTTTGTTCATCACCAGATGGGACCTCATGCAAGCTGGACACATGGATCCCCTGCAGCATTTCATGTCAGACCAAGACTGCAGAGACCCATGTCAGCGCCTGGCGAGAAACTTGAAATGCTAGTCAAGGGCAGCCCCCTGTATGGTCAGCCCCCATGGTGGGGGTGGGGGTCCTCAGACGACGAAATTTACAACTACCCAAACACTGCGACCATTCTGGAGCCGGGAGGTGACAGTCAGACTGTAGCAGGCCAACAGGCTCTGTCTCTTAAAAAGAAGAAAATTACTAAGAAAGACGCGCTGGAAATGGCACAAAGAAGGCACAGCACTGGCACTGTATCTGTGTTATCAGAGTCTAAGGCGCGGATTGTTACAACAAGAACTTCTAATACGACATATGACCCTGAGCAGGAGAGAGCCATCAAACAGCGAGAAGAATTTGTCGTGTTTCAGAAGAAATCTTCTCTGCCGAGTCCAGGTTATAGCGAGCAGTTGTCTCCTGTGTTTGAAAACTCGACTAGTAAAGACTGGGAAATGCCAAGTGCGCGAAACGAACAAGCAAAGCGTGACTCTAGTTCGTCAACGGAGAATTCTCCGGATGATGGGAGTGAGGGGCATTCAAGACTCGGGTCTTCCTACGAGATTCCTTTTATTCCGGACTACGATGAAGTTCCTGAAAGACCTGTAAGTCTAAAAAGTGAGAAAGGAAAAGTAGCGGCACATGATGTTGCGCGGAAAGGTTCTGCGGAGAAGCAAGATCGGGTCGTAAGGAAAAAGCCCACCAGTAAAATTAAAAAGAGAGTCACTGCTTCAGATGCGCCGGCAAAGAATGGAAAACTAACATCAAGTTCCAGAAAGCATTCAAGCGACACCAGTGAGTCAGAGTACGAGCCATCCTCTCACCCCTCCCGGCGATCGGGTGTGGTCGCTGTAGGTACGGCCACTTCCTCCAGTGGGGTGTTTGGTCTGACGGAGGTGAGCCTTGGTGATCAGGACAGGCGAGAGACGCTTTCTCCTGCTCTTCTACCAAGCTGGGTACAGCAGTGGGCGAACAGTACTGACAATCGGGGCAGCGCTGCAGTTCAACCGATCGAGGTGTTTGGTTCTTCTGAAGATTCTACAGCGAGTAGTGTGATGTCTTCCTCGAGTCAAATTCCAGTTCCTGTTGAACCGGACAACTCAGAAAATAACGCCAAGCCTGTCAAGAGCGTTTCCCCGCCGAGTCTCAGCAGGCCGAAGTCGGCATCATCAAGATCAAACACGCCGGGTGTGATGCGAAGCCAGAGCTTATCATCTGCCAATCTGTCCTCTTCTCCGAAGCCTTCCGCCTCCCCCAGAGTCTCCCGGAGTAAGACAATGACTGCTGCCGTACGGCGCTCTTACCCGGCGGCTACTTCAAGCGAGTCAGACAAAAAACCAAGCGATAGTGTACGGAGAAGAGGACCAGTAAGCAGCACGTCGGACGATAGTGATGTGGAATCCAGCGACGCGTCGCAAACAAGGCACATAAAAGATTTCCGGAGAAGGAGTGATGAATCTGACAGGAGAGGGGTGCAGCTTATTCCTGAAAAGGAAGGAAAGAGACCGTTTTCTGCCCCTCGTCCCAACAAGACTGCTATGCTAAGGGCGCATAATAGCCGAGAAGCCGTCAAGAATAGCGGCGTTAAAAGTAAAACTCCGATTTCGGCGAAAGCTAGGGCTACAAAGAGCTCACCGCCGAGCAATTCCGGAAACGGAAGTGGTGGAGCTGTCAATCACACGAGCGATTCAGCAAGAGTGTGGAGTCCCAGTACGAAAAGGTCGAGCAAGTCCTCCACGGGCGACGATAACCGTGAGGTCGGGGAGAATAGTATTAAGACTGATGGTGATGATTTATGCAGCTCACCAGCAAATGACGGCACTCAGGAGGCGGTTGATGACGTCTTCACTTCGGGCCCAGTCCGACCTCTGCCAGAGTCACTTCAGATGAAGCGAGATGATACAGTGAACAAAACATTCGTGCTTGATGAAGGCAACGAGGACGTTTCAGTGTCGTCTCCTGAAGACAGCTCCATGCAAGCCTGGGAAGGCAAGGTCTCCAACACTGAACATGAGCTTGAATCTAAAGACCTCCTGGACAAGAGCACTCTACCATCTTCACCGTCAAGTAAAGAGCCAAAGGAGATAAAACTAGAATCCACGAACACGAGGGGGATTAGCCTGCGCAGCAAGCTCATTCCTTTTGCCCCATTTCTTGAGACTCAGTCGTACACACCGCCCGTCTCTGACCAGCCTTTTGAGCCACCAAGCGACTCTGCGGAGTCAGCGGACTCGTCGGGTTCCCGATCTTCCACAGGAGAGGGAAGACCGATGTCGCCTGAGTCAGTTGTCTCTATGGCAACTGGTACCTCCCCCTCGCCTCCTTTGACTCCGAGTTCTGCAGCCAGGAAAATGTTTGATTTCAAGGGGGGAGCTGCATCTTCACAAAGCCGAAGACAGTGGGGTGTGACAGACAAGGTGCCGACACTTATTGACTTTATTAGTGTTTTCTCGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q498L0	Centrosomal protein of 170 kDa protein B OS=Xenopus laevis OX=8355 GN=cep170b PE=2 SV=1
A0JM08	Centrosomal protein of 170 kDa protein B OS=Xenopus tropicalis OX=8364 GN=cep170b PE=2 SV=1
Q80U49	Centrosomal protein of 170 kDa protein B OS=Mus musculus OX=10090 GN=Cep170b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003052 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00498 all species →	FHA	FHA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR051176 all species →	Family	Centrosomal and Immune Signaling Modulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15715 all species →	CENTROSOMAL PROTEIN OF 170 KDA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.1634_evm.model.Ap13.1635.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.