Gene detail

Detailed information of evm.model.Ap13.1708 in Astrangia poculata

Genomic Location: Ap13:18180712...18198272
NR annotation: CAH3044857.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.1708

ttccaacagaaggcccagcaaacctgaatgtatatgcaactggaagttggagcctgcaagcgaaatgggacgtggttccattgtgctgcagatatggaattattataggataccaagttcttcttgtaggccacgacaatcgagaacatgtacgaaacgttaaagttaatgaatccactctctcgtttgaatttcacaacctactggcttattatgcttatgatgtgtcagtggccgccctcacaggaaaaggagctggtgttgcttctgaaaaaggaactgtaacggatgaagcggagcatcagtggcaaatctttcttggaaacagacgctgcaattcgcccccggtgatgacaccgagttgtgatgtgtcaactcagctgcttacctcaaccgattcaacttctccttgttggacattcgacaattccaccagaaatgtgttaggagttctgcaaggatttaacgtctactacgtcaggcaggacggtttaagctttcctttggttacaacaggcactgacaaatcatcgttaacacttataaatctcgaaccttttaccgactataccgtgagagtgggggcatttacaatagcgggagagacgaatagcagcactgttgtcgtccggactcaacaagatggagctccaccagacaatgtatttgcatacaatgtaagttccactgcgatcaaagttcactggggatccattcctgttgacttacaaaacggaatcaccttgggatatcgtctgattgtcatgctgaactcaagcgtagaacgcaacctttccttatcaccaaacatgagcgcaatggttgttacaaacctacagagaaatacaacttaccaagttgctctatccggatttactgtaaaaggaggtggagaacagagcacgcctatcagtgtcacaactgacgattcaacagaaacgctcatatgcaacgtaaacccattatcaggagtagctgtcgaaacaaatttcactcttgattgtagcaaatcggacgatccaaacaacccacttgtttacgacttcatggttcctttagcagatggcctgagtaccattttgtggtacggatactctacaaacacagaaataaagttaccaccaggtgatcctttaaaaaataactctctaacaatcaaagccggagtaacaagctctactggttccaagtcaaacacttcactagacatcagtgtcacaactgacgcatcaacagaaacgctcatatgcaacgtgaacccattatctggagtagctgtcgaaacaaatttcactattgattgtagcaaatgggacgatccaaacacgccacttctttacgacttcatggttcctttagcagatggcctgagtaccattttgtggtacggatactctacaaacacagaaataaagttaccaccaggtgatcctttaaaaaataactctgtaacaatcaaagccggagtaacaagctctactggttccaagtcaaacacttcactagacatccaggtttttcctttgcctttagtgagcactttagaagggtcagaagaaatacgccgtcttttggaaggcccttttgttacgcacattgatagaggagagctgaaccaagccactcagttggccattgctgttttgaaatccttggagctacaggatagcaagattatgagcaaagaaaagagaagtcaggtacaactagttataaggaaactaagcagcgtagatgtacgggacctggcaacactcatccagatttcttcaatgatgtcgctcgcgatggacgatccaacagaattgacacaggaagctatggtcagtaagaaatctattaaggagatgctgcaggacatgacaaatttgttggccacttacagttccagtggagatgttatggacgtgctttattctcagagagcccagactaatctgatttatgccctgggtaaacacatccaggtttcatctgcgcttgaacgtgagactctcacttccttgggacatcctcgcagggttttgaggatcgtggcgaacaaaaaagttatcggtgaaaaagccacagtaattcatactgaagtcattgatgtattaactgtgagactacatcctgacggagcacctggatcctggttggctctggtatcaggatccgttcagttgcccgactcagccgatatgaaagaggctttaacaggagttggaaacttcgttgatgtagagatcatttcgtcgcttgtcaactattattactgggactccagtgcagatcttatcacatcacgtgtacttacaaatgatttgaggaaggaatcaggtgaagttcaaacagtgcgaaacctttcaacggacatacagttaggaatttggctcagtgaagaagcacctgaaactgagtccaaaagcgttaaaacggcatcgtatcttaagccagggaagatgcagtatcacagaatagaagtgaaaagagaacaaacctcttaccttataacaataacagcaattgaaactttaaatgtttttgcgaaatatgaaagtaaaccatcagaagaagatcatggaaataattacactattccagacttttcttcatgcacgaaaaatgtgacagtgacagacgaacaggaagagtacaactgcacttgcaatccacgccagctacttttaacaaatgaagttatcaaaaagcctggagtgtattatttagggatcctttactcaagaaactcttcttctggtaaccattcccgtcgtacaaggaggtcttgttttagcactaacagacaaaagcggtcgtgtgtcgagacgaaggaccctccacctcctcaaggagtttatgaaactggcaccatcccaccttacgatccgcaaataaacttgaactataccattgaaactgatgaactcagctgtcggttttggtcacatggaaagaacaaatggctgacagaaggctgcaaggtaagccctcaatccacgatacattaccttttgtgtttgtgtaaccacctaacatcttttggtggaggacttttggtagcacctaatccgattgatatggataaagtttttaaagagctgagccgccttgatgagactggtaattttggagttctttttacaatcatcttcgtgtttttgttgtatgttatcgctatcgtcttcgccaagagagcagacaggaaagatcaagctaagcttggtcccaagattgtactggaaacggaaggcgaccttctgtccaatcaatatgagctcacaatcagtacaggtgtgtggccagacagtggtaccacagctaaggttaccatggtattttacggaagctctggcaatagtggaccaatcacaatatttcgcaaccttgatcccacccgaattctactttcccgtggcagtgtcgacaagtacattatttcgcttgcgacctctcttggaacacttcaccacgcttatatctggcatgaaaactctggagaaagtccttcttggtttttagtgtag

Transcript

evm.model.Ap13.1708

TTCCAACAGAAGGCCCAGCAAACCTGAATGTATATGCAACTGGAAGTTGGAGCCTGCAAGCGAAATGGGACGTGGTTCCATTGTGCTGCAGATATGGAATTATTATAGGATACCAAGTTCTTCTTGTAGGCCACGACAATCGAGAACATGTACGAAACGTTAAAGTTAATGAATCCACTCTCTCGTTTGAATTTCACAACCTACTGGCTTATTATGCTTATGATGTGTCAGTGGCCGCCCTCACAGGAAAAGGAGCTGGTGTTGCTTCTGAAAAAGGAACTGTAACGGATGAAGCGGAGCATCAGTGGCAAATCTTTCTTGGAAACAGACGCTGCAATTCGCCCCCGGTGATGACACCGAGTTGTGATGTGTCAACTCAGCTGCTTACCTCAACCGATTCAACTTCTCCTTGTTGGACATTCGACAATTCCACCAGAAATGTGTTAGGAGTTCTGCAAGGATTTAACGTCTACTACGTCAGGCAGGACGGTTTAAGCTTTCCTTTGGTTACAACAGGCACTGACAAATCATCGTTAACACTTATAAATCTCGAACCTTTTACCGACTATACCGTGAGAGTGGGGGCATTTACAATAGCGGGAGAGACGAATAGCAGCACTGTTGTCGTCCGGACTCAACAAGATGGAGCTCCACCAGACAATGTATTTGCATACAATGTAAGTTCCACTGCGATCAAAGTTCACTGGGGATCCATTCCTGTTGACTTACAAAACGGAATCACCTTGGGATATCGTCTGATTGTCATGCTGAACTCAAGCGTAGAACGCAACCTTTCCTTATCACCAAACATGAGCGCAATGGTTGTTACAAACCTACAGAGAAATACAACTTACCAAGTTGCTCTATCCGGATTTACTGTAAAAGGAGGTGGAGAACAGAGCACGCCTATCAGTGTCACAACTGACGATTCAACAGAAACGCTCATATGCAACGTAAACCCATTATCAGGAGTAGCTGTCGAAACAAATTTCACTCTTGATTGTAGCAAATCGGACGATCCAAACAACCCACTTGTTTACGACTTCATGGTTCCTTTAGCAGATGGCCTGAGTACCATTTTGTGGTACGGATACTCTACAAACACAGAAATAAAGTTACCACCAGGTGATCCTTTAAAAAATAACTCTCTAACAATCAAAGCCGGAGTAACAAGCTCTACTGGTTCCAAGTCAAACACTTCACTAGACATCAGTGTCACAACTGACGCATCAACAGAAACGCTCATATGCAACGTGAACCCATTATCTGGAGTAGCTGTCGAAACAAATTTCACTATTGATTGTAGCAAATGGGACGATCCAAACACGCCACTTCTTTACGACTTCATGGTTCCTTTAGCAGATGGCCTGAGTACCATTTTGTGGTACGGATACTCTACAAACACAGAAATAAAGTTACCACCAGGTGATCCTTTAAAAAATAACTCTGTAACAATCAAAGCCGGAGTAACAAGCTCTACTGGTTCCAAGTCAAACACTTCACTAGACATCCAGGTTTTTCCTTTGCCTTTAGTGAGCACTTTAGAAGGGTCAGAAGAAATACGCCGTCTTTTGGAAGGCCCTTTTGTTACGCACATTGATAGAGGAGAGCTGAACCAAGCCACTCAGTTGGCCATTGCTGTTTTGAAATCCTTGGAGCTACAGGATAGCAAGATTATGAGCAAAGAAAAGAGAAGTCAGGTACAACTAGTTATAAGGAAACTAAGCAGCGTAGATGTACGGGACCTGGCAACACTCATCCAGATTTCTTCAATGATGTCGCTCGCGATGGACGATCCAACAGAATTGACACAGGAAGCTATGGTCAGTAAGAAATCTATTAAGGAGATGCTGCAGGACATGACAAATTTGTTGGCCACTTACAGTTCCAGTGGAGATGTTATGGACGTGCTTTATTCTCAGAGAGCCCAGACTAATCTGATTTATGCCCTGGGTAAACACATCCAGGTTTCATCTGCGCTTGAACGTGAGACTCTCACTTCCTTGGGACATCCTCGCAGGGTTTTGAGGATCGTGGCGAACAAAAAAGTTATCGGTGAAAAAGCCACAGTAATTCATACTGAAGTCATTGATGTATTAACTGTGAGACTACATCCTGACGGAGCACCTGGATCCTGGTTGGCTCTGGTATCAGGATCCGTTCAGTTGCCCGACTCAGCCGATATGAAAGAGGCTTTAACAGGAGTTGGAAACTTCGTTGATGTAGAGATCATTTCGTCGCTTGTCAACTATTATTACTGGGACTCCAGTGCAGATCTTATCACATCACGTGTACTTACAAATGATTTGAGGAAGGAATCAGGTGAAGTTCAAACAGTGCGAAACCTTTCAACGGACATACAGTTAGGAATTTGGCTCAGTGAAGAAGCACCTGAAACTGAGTCCAAAAGCGTTAAAACGGCATCGTATCTTAAGCCAGGGAAGATGCAGTATCACAGAATAGAAGTGAAAAGAGAACAAACCTCTTACCTTATAACAATAACAGCAATTGAAACTTTAAATGTTTTTGCGAAATATGAAAGTAAACCATCAGAAGAAGATCATGGAAATAATTACACTATTCCAGACTTTTCTTCATGCACGAAAAATGTGACAGTGACAGACGAACAGGAAGAGTACAACTGCACTTGCAATCCACGCCAGCTACTTTTAACAAATGAAGTTATCAAAAAGCCTGGAGTGTATTATTTAGGGATCCTTTACTCAAGAAACTCTTCTTCTGGTAACCATTCCCGTCGTACAAGGAGGTCTTGTTTTAGCACTAACAGACAAAAGCGGTCGTGTGTCGAGACGAAGGACCCTCCACCTCCTCAAGGAGTTTATGAAACTGGCACCATCCCACCTTACGATCCGCAAATAAACTTGAACTATACCATTGAAACTGATGAACTCAGCTGTCGGTTTTGGTCACATGGAAAGAACAAATGGCTGACAGAAGGCTGCAAGGTAAGCCCTCAATCCACGATACATTACCTTTTGTGTTTGTGTAACCACCTAACATCTTTTGGTGGAGGACTTTTGGTAGCACCTAATCCGATTGATATGGATAAAGTTTTTAAAGAGCTGAGCCGCCTTGATGAGACTGGTAATTTTGGAGTTCTTTTTACAATCATCTTCGTGTTTTTGTTGTATGTTATCGCTATCGTCTTCGCCAAGAGAGCAGACAGGAAAGATCAAGCTAAGCTTGGTCCCAAGATTGTACTGGAAACGGAAGGCGACCTTCTGTCCAATCAATATGAGCTCACAATCAGTACAGGTGTGTGGCCAGACAGTGGTACCACAGCTAAGGTTACCATGGTATTTTACGGAAGCTCTGGCAATAGTGGACCAATCACAATATTTCGCAACCTTGATCCCACCCGAATTCTACTTTCCCGTGGCAGTGTCGACAAGTACATTATTTCGCTTGCGACCTCTCTTGGAACACTTCACCACGCTTATATCTGGCATGAAAACTCTGGAGAAAGTCCTTCTTGGTTTTTAGTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TN88	Polycystin-1-like protein 2 OS=Mus musculus OX=10090 GN=Pkd1l2 PE=2 SV=1
Q2EG98	Polycystin-1-like protein 3 OS=Mus musculus OX=10090 GN=Pkd1l3 PE=1 SV=3
Q7Z442	Polycystin-1-like protein 2 OS=Homo sapiens OX=9606 GN=PKD1L2 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000040 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02010 all species →	REJ	REJ domain	Family	Interproscan
PF01477 all species →	PLAT	PLAT/LH2 domain	Domain	Interproscan
PF01825 all species →	GPS	GPCR proteolysis site, GPS, motif	Motif	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR002859 all species →	Domain	PKD/REJ-like domain	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR046338 all species →	Homologous_superfamily	GAIN domain superfamily	Interproscan
IPR001024 all species →	Domain	PLAT/LH2 domain	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR000203 all species →	Conserved_site	GPS motif	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46730 all species →	POLYCYSTIN-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006816 all species →	Biological Process	calcium ion transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.1708.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.