Gene detail

Detailed information of evm.model.Ap13.1746 in Astrangia poculata

Genomic Location: Ap13:18681504...18696988
NR annotation: XP_027044933.1, sodium channel protein 60E-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.1746

atgattgtgatcatagtaattctcataaactgcgtgtttcttgcgttgaaagatccaccggaagaagctgagtatctcttcacagcaatttacaccctggagatgcttttaaagatcgtgtcacgtggatttattcttcatagttacgcttacctcagagatccctggaactggctggacttcattgtagtcgttttaggatatataacaatagctccaaacattgtgaacttcacggccattcgaacagtgcgtgtgctgagagctctaaggactatctcggttgtttcaggtctccgagcgatggtgaacacactacttcgttccttaaagctgttgagtgatgtcctggtcttgtttctgttctttcttgctgtgatggcgctcattggactgcagctgtttgtgggcgaattaaggaacaagtgtgttcgagacattcccgtgaacctcactgtagagttcatggattatgttcagaatgaaagtgcgtggtacatacgtcagggtgaacctgtgatttgtggaaactcttcgtgggctgggtcttgtccagtaaattacacatgtatagcagacgctgggcctaaccctgataatggttttaccagctttgaccacattggatgggctttgctcatggcgttccaaattctcacaatggactactgggaaaacctttacaacaaggttgtccaggctgtaggtgtgtggtatgtcttctactttgtgattaccattttcttctgctcgttctatcttcttaatctcgtgttagctgtggtgtatctatcatacgaaaaggaactgcaatcccttgaacaagaggagagacgaaaggtgcatttgaagaaaaccgctgcttcttacatcgcagattctgacacccttaagaaccttaaaccgctgcagaaactcagcaagacgaagaaagctatgattgaagtcacgcaagccgcttgtatcgtgactgaagtgccagatgtccagcaaggagataccagcaatcgattaagtctagcggaaacagtcctgacgtgctttcaacgtgcaaagacgagttgtgaaacctgtttaaacaagttgccattttttaagcccatgagaagaggcatgcgtgctgttgccgaaagtgcagcatttgacgctgttatcattggtgttatcttgttgaataccattgtgcttgctctctatcatcacggaattgaacggtcgttcgagaaaattttggacttgtgtaacatggtgttcacgataatctttgttgtggagatgatgtggaaacttatcgcctttggtccgctgacctacgtgaaaagccggtggaacgtacttgacgcgctcattgtgattgcaagtgttgctgggtatcttacagagtctggtggaagctttagtattttccgtagcttaagactgttccgagttttaaaccttgcccaatcctggaagaccatggccaaactggtcgcggccataaccaaaagcgtgggacctgttggtaatatcacacttatacttggtgtcatcatctacatattcgctgttgtgggaatgagggtatttggtgatgcttacacagaggacaagtttggtgaggtcggtgtaccgcgctggaacttcgatgacttttggcacgcattcatgatggtgttcagagtgctgtgcggggagtggatcgagcctctctgggactgcatgagggccactaacctgatgtccattttgttctttttacccgccttcgttattggtaatttctattgtgagtacttcattgttatctgtactgctgttcttaacctcttcattgctttattgctgagcgcttttgacactgaagacgacgaaaacatttctaatgacgaagaggggcagaacaccagactgaaacgtgttctaaagaaacttacaaagacgaaaaagactcggctgtttgtggctacgtttaaggaaagatacaaactgtatgaggtgcaacttctggagagtaacgtcgcatcacaaggggcccacatgagtaaacatgaggatggatgcaaagcatccgggaacttccaagaaggtcgagctgaaattataaccagtgataaccaatcaccaaaaagaacgcccaacaggtacatcgtggaagtagacgactgtttgccagagtgctgcatgttttccatgtcgtcacaccaacacttcaagtggctgaagttccggtgcagcatcagatgtctggtggaacacaagtactttgagtggttcattctcttcactgttatgttcagtagcttcgttctgatttttgaggacattcacctccctgagaggccacttttagaaaaggcgttagaaattctcaactatttctttgctgctgtgttttcgctggagtttattcttaagattctcggtctaggtgttgtcagatatttctcttcagtttggaactgtttggacgctttcatcgtagctatctcactagcttgtctgtcagacaacaaacagttgtcagtatttcgatctcttcgaactctcagggcactacggcctctccgagctatatcccggatggagggaatgaaggttgtcatcaacgcattattcgcagccattccaggtatcggcaatgttcttgtggtgtcgcttctcttctggttgatatttagcatccttggtgtccagctgttctctggaaagttccaagcatgcgtagatcacgacggtgaaagagtactggccagcgtcattccaaacagaacagaatgtcttcggtttccggaaaagtacgtttggaagaactcagaagcgaattttgataacgttctcaatggcttccttgcactctttcttgtggcaacgtttgaaggttggattgaagtcatgcacaatgcagttgattccacggaggttgatcaacagccccacaaggatagcaacatgattgcgtatatttactttgtagcatttatcattcttggttctttctttgttctcaatctgttcgtcggggttgtgattgacaacttcaattccttgaagaagaagtacgaagaaataagcagcatggggatgttcctgaccgagacacaaaggaagtgggtaaatttcctgaaagaggcagctaagaaaaagcctcctgcaaaaggattaagaccgagggaccgattccgtgccgtgttatacgacgtggtgacaggagacaagtttgagattgccattctgacggtgataatatgtaacatggtgatgatgatgatacaacattatggacagtcggcccaggtctccagcgtcttgcggatttcaaactgggttttcactggaatattcacagctgaagccatagccaaactgattgccttgcgacaacactactttaagaaggcgtggaatgtatttgattttatcatagttatttcatctctcatcggagtggtacttgatgagatcaacgtcaaagacacagttgtcaatcccagtctcctccgtgtcatgcggatcttcagaatcgccaggcttctaagagtgcttgaatttgccaaaggaattcgccagcttcttgtggcactgatgatctcactcccggcgttatttaacatcggaacgttattgtttttggtcatttttatctatgccatcatcggcatgtctgcattcgggcaagtcaagaaacaaggaagcctggatggcattgtgaattttgaaacgtttgggagttccatgatgctgctgttccgcctgtccacgggctcgggttggaatgacgtcatgagttcattgtctcttcaaccgccggactgcgacccgtattataaaggctttccacaaggcaactgtggttcgccgctaggagctgccggataccttataagctacatcgtcatcgtgttcatgatcatagttaacatgtacatcgctgtcattcttgaaaacgtcaaccgcgctcatgaaaatgacgattttgccatcacgaaggaagatttcgataggtactatcttaaatgggcagcatttgttccaaatggtaaacaatttattcctcttagtcaactgtcagactttgtggacgagttggacaagccgttcaggcatgccaaaccaaacgaggctcgcctgcaacagctggacataccgatacgcgccggggaacttattcactgctttgacctgctcaaggcacttgtgcgttgtattctggaagagcatggcgagtcaccggaagtgttccaagagattacagtcagaatggaagcacagtttacaaagtctcttgggaggaagcattcaatcgctgttctcggctccacgcatacgaaatttcaatgcgacgagcacactgaggcggtgtag

Transcript

evm.model.Ap13.1746

ATGATTGTGATCATAGTAATTCTCATAAACTGCGTGTTTCTTGCGTTGAAAGATCCACCGGAAGAAGCTGAGTATCTCTTCACAGCAATTTACACCCTGGAGATGCTTTTAAAGATCGTGTCACGTGGATTTATTCTTCATAGTTACGCTTACCTCAGAGATCCCTGGAACTGGCTGGACTTCATTGTAGTCGTTTTAGGATATATAACAATAGCTCCAAACATTGTGAACTTCACGGCCATTCGAACAGTGCGTGTGCTGAGAGCTCTAAGGACTATCTCGGTTGTTTCAGGTCTCCGAGCGATGGTGAACACACTACTTCGTTCCTTAAAGCTGTTGAGTGATGTCCTGGTCTTGTTTCTGTTCTTTCTTGCTGTGATGGCGCTCATTGGACTGCAGCTGTTTGTGGGCGAATTAAGGAACAAGTGTGTTCGAGACATTCCCGTGAACCTCACTGTAGAGTTCATGGATTATGTTCAGAATGAAAGTGCGTGGTACATACGTCAGGGTGAACCTGTGATTTGTGGAAACTCTTCGTGGGCTGGGTCTTGTCCAGTAAATTACACATGTATAGCAGACGCTGGGCCTAACCCTGATAATGGTTTTACCAGCTTTGACCACATTGGATGGGCTTTGCTCATGGCGTTCCAAATTCTCACAATGGACTACTGGGAAAACCTTTACAACAAGGTTGTCCAGGCTGTAGGTGTGTGGTATGTCTTCTACTTTGTGATTACCATTTTCTTCTGCTCGTTCTATCTTCTTAATCTCGTGTTAGCTGTGGTGTATCTATCATACGAAAAGGAACTGCAATCCCTTGAACAAGAGGAGAGACGAAAGGTGCATTTGAAGAAAACCGCTGCTTCTTACATCGCAGATTCTGACACCCTTAAGAACCTTAAACCGCTGCAGAAACTCAGCAAGACGAAGAAAGCTATGATTGAAGTCACGCAAGCCGCTTGTATCGTGACTGAAGTGCCAGATGTCCAGCAAGGAGATACCAGCAATCGATTAAGTCTAGCGGAAACAGTCCTGACGTGCTTTCAACGTGCAAAGACGAGTTGTGAAACCTGTTTAAACAAGTTGCCATTTTTTAAGCCCATGAGAAGAGGCATGCGTGCTGTTGCCGAAAGTGCAGCATTTGACGCTGTTATCATTGGTGTTATCTTGTTGAATACCATTGTGCTTGCTCTCTATCATCACGGAATTGAACGGTCGTTCGAGAAAATTTTGGACTTGTGTAACATGGTGTTCACGATAATCTTTGTTGTGGAGATGATGTGGAAACTTATCGCCTTTGGTCCGCTGACCTACGTGAAAAGCCGGTGGAACGTACTTGACGCGCTCATTGTGATTGCAAGTGTTGCTGGGTATCTTACAGAGTCTGGTGGAAGCTTTAGTATTTTCCGTAGCTTAAGACTGTTCCGAGTTTTAAACCTTGCCCAATCCTGGAAGACCATGGCCAAACTGGTCGCGGCCATAACCAAAAGCGTGGGACCTGTTGGTAATATCACACTTATACTTGGTGTCATCATCTACATATTCGCTGTTGTGGGAATGAGGGTATTTGGTGATGCTTACACAGAGGACAAGTTTGGTGAGGTCGGTGTACCGCGCTGGAACTTCGATGACTTTTGGCACGCATTCATGATGGTGTTCAGAGTGCTGTGCGGGGAGTGGATCGAGCCTCTCTGGGACTGCATGAGGGCCACTAACCTGATGTCCATTTTGTTCTTTTTACCCGCCTTCGTTATTGGTAATTTCTATTGTGAGTACTTCATTGTTATCTGTACTGCTGTTCTTAACCTCTTCATTGCTTTATTGCTGAGCGCTTTTGACACTGAAGACGACGAAAACATTTCTAATGACGAAGAGGGGCAGAACACCAGACTGAAACGTGTTCTAAAGAAACTTACAAAGACGAAAAAGACTCGGCTGTTTGTGGCTACGTTTAAGGAAAGATACAAACTGTATGAGGTGCAACTTCTGGAGAGTAACGTCGCATCACAAGGGGCCCACATGAGTAAACATGAGGATGGATGCAAAGCATCCGGGAACTTCCAAGAAGGTCGAGCTGAAATTATAACCAGTGATAACCAATCACCAAAAAGAACGCCCAACAGGTACATCGTGGAAGTAGACGACTGTTTGCCAGAGTGCTGCATGTTTTCCATGTCGTCACACCAACACTTCAAGTGGCTGAAGTTCCGGTGCAGCATCAGATGTCTGGTGGAACACAAGTACTTTGAGTGGTTCATTCTCTTCACTGTTATGTTCAGTAGCTTCGTTCTGATTTTTGAGGACATTCACCTCCCTGAGAGGCCACTTTTAGAAAAGGCGTTAGAAATTCTCAACTATTTCTTTGCTGCTGTGTTTTCGCTGGAGTTTATTCTTAAGATTCTCGGTCTAGGTGTTGTCAGATATTTCTCTTCAGTTTGGAACTGTTTGGACGCTTTCATCGTAGCTATCTCACTAGCTTGTCTGTCAGACAACAAACAGTTGTCAGTATTTCGATCTCTTCGAACTCTCAGGGCACTACGGCCTCTCCGAGCTATATCCCGGATGGAGGGAATGAAGGTTGTCATCAACGCATTATTCGCAGCCATTCCAGGTATCGGCAATGTTCTTGTGGTGTCGCTTCTCTTCTGGTTGATATTTAGCATCCTTGGTGTCCAGCTGTTCTCTGGAAAGTTCCAAGCATGCGTAGATCACGACGGTGAAAGAGTACTGGCCAGCGTCATTCCAAACAGAACAGAATGTCTTCGGTTTCCGGAAAAGTACGTTTGGAAGAACTCAGAAGCGAATTTTGATAACGTTCTCAATGGCTTCCTTGCACTCTTTCTTGTGGCAACGTTTGAAGGTTGGATTGAAGTCATGCACAATGCAGTTGATTCCACGGAGGTTGATCAACAGCCCCACAAGGATAGCAACATGATTGCGTATATTTACTTTGTAGCATTTATCATTCTTGGTTCTTTCTTTGTTCTCAATCTGTTCGTCGGGGTTGTGATTGACAACTTCAATTCCTTGAAGAAGAAGTACGAAGAAATAAGCAGCATGGGGATGTTCCTGACCGAGACACAAAGGAAGTGGGTAAATTTCCTGAAAGAGGCAGCTAAGAAAAAGCCTCCTGCAAAAGGATTAAGACCGAGGGACCGATTCCGTGCCGTGTTATACGACGTGGTGACAGGAGACAAGTTTGAGATTGCCATTCTGACGGTGATAATATGTAACATGGTGATGATGATGATACAACATTATGGACAGTCGGCCCAGGTCTCCAGCGTCTTGCGGATTTCAAACTGGGTTTTCACTGGAATATTCACAGCTGAAGCCATAGCCAAACTGATTGCCTTGCGACAACACTACTTTAAGAAGGCGTGGAATGTATTTGATTTTATCATAGTTATTTCATCTCTCATCGGAGTGGTACTTGATGAGATCAACGTCAAAGACACAGTTGTCAATCCCAGTCTCCTCCGTGTCATGCGGATCTTCAGAATCGCCAGGCTTCTAAGAGTGCTTGAATTTGCCAAAGGAATTCGCCAGCTTCTTGTGGCACTGATGATCTCACTCCCGGCGTTATTTAACATCGGAACGTTATTGTTTTTGGTCATTTTTATCTATGCCATCATCGGCATGTCTGCATTCGGGCAAGTCAAGAAACAAGGAAGCCTGGATGGCATTGTGAATTTTGAAACGTTTGGGAGTTCCATGATGCTGCTGTTCCGCCTGTCCACGGGCTCGGGTTGGAATGACGTCATGAGTTCATTGTCTCTTCAACCGCCGGACTGCGACCCGTATTATAAAGGCTTTCCACAAGGCAACTGTGGTTCGCCGCTAGGAGCTGCCGGATACCTTATAAGCTACATCGTCATCGTGTTCATGATCATAGTTAACATGTACATCGCTGTCATTCTTGAAAACGTCAACCGCGCTCATGAAAATGACGATTTTGCCATCACGAAGGAAGATTTCGATAGGTACTATCTTAAATGGGCAGCATTTGTTCCAAATGGTAAACAATTTATTCCTCTTAGTCAACTGTCAGACTTTGTGGACGAGTTGGACAAGCCGTTCAGGCATGCCAAACCAAACGAGGCTCGCCTGCAACAGCTGGACATACCGATACGCGCCGGGGAACTTATTCACTGCTTTGACCTGCTCAAGGCACTTGTGCGTTGTATTCTGGAAGAGCATGGCGAGTCACCGGAAGTGTTCCAAGAGATTACAGTCAGAATGGAAGCACAGTTTACAAAGTCTCTTGGGAGGAAGCATTCAATCGCTGTTCTCGGCTCCACGCATACGAAATTTCAATGCGACGAGCACACTGAGGCGGTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q05973	Sodium channel protein 1 brain OS=Heterololigo bleekeri OX=1423826 PE=2 SV=1
Q20JQ7	Sodium channel protein type 4 subunit alpha B OS=Danio rerio OX=7955 GN=scn4ab PE=2 SV=1
Q2XVR4	Sodium channel protein type 4 subunit alpha B OS=Tetraodon nigroviridis OX=99883 GN=scn4ab PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000452 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043203 all species →	Family	Voltage-gated cation channel calcium and sodium	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR027359 all species →	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan
IPR001696 all species →	Family	Voltage gated sodium channel, alpha subunit	Interproscan
IPR044564 all species →	Domain	Voltage-gated sodium channel alpha subunit, inactivation gate	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10037 all species →	VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001518 all species →	Cellular Component	voltage-gated sodium channel complex	Interproscan
GO:0005248 all species →	Molecular Function	voltage-gated sodium channel activity	Interproscan
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0019228 all species →	Biological Process	neuronal action potential	Interproscan
GO:0035725 all species →	Biological Process	sodium ion transmembrane transport	Interproscan
GO:0086010 all species →	Biological Process	membrane depolarization during action potential	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0006814 all species →	Biological Process	sodium ion transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04837	SCN4A, NAV1.4; voltage-gated sodium channel type IV alpha	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.