Gene detail

Detailed information of evm.model.Ap13.1750 in Astrangia poculata

Genomic Location: Ap13:18744773...18757981
NR annotation: XP_020608525.1, calpain-9-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.1750

atgtcccttaagcgcgccctaccgagagagaagtacctttcccttcagagggatctccagaagaaaggtgttttatatgaagacagagatttcccgccagtttcccgcagcctcttcactaagacgcgtccatctgttagtcttcaatggaaaaggccaaaggacatctgcaaaaaagagcccaagtttttcaccaaaggagtaagccgaacagacatcgctcaaggacgaatgctgaactgctggtttgtggcagccgtggcttctttgacagacgccaaggagttatttgacgccgtgtgcccagatcaaagctttgatgagcgtacttactgcggaatgttcagatttaacttttggcgatttggtgaatgggtggaggtcataattgatgactttttgcctacccacaatggcaagttatattacgctcgctcagatgacccggacgaattctggagcgcattgttagagaaggcttatgctaaagtttgcggatcctacgaagccatgggtttaggacgtataagtgaagctttgcaagattttacaggtggagttatcgagatgatcaacctacaaacacctccagctgagggatcgcctgacgtctatagagtgttggaaaaggcacatgagcgtcactcgctgatgggcgcttcaatagagacaagctcacagaccattcagagaacgttgccaaatggacttataactggacatgcttactcaataacaggttttgctcaggttgatttaccgacattccgcggtcttaagctaattcgcctccgaaatcctcatggaaatagttcagagtggaagggagcttggagtgacaggtctgacgagtggtatcagttatcaacagaagagcgaaagagactgaatcttgtgtttgacgatgacggggaattttggatgacaatggaagattttcaggcgaattttacacgagtagagatatgcatgcttactccagacagtgttttggaggaggaccagaagaaatcatggaagataagacgagagaaaggtcgctggcaaacggacgctacagctggtggctgcaggaactttatagagacattccacattaatcctcagataaggattgagttacaagacccggatgaggacgatgacgaagaccgctgttcaattgtagggtcgctcatgcgcattgatcgaaagagaaccccagctaacgatagaccaccaattgggttcgccatctataagataccagaagacctgcgtggtaccaaacagcgttttggcagaaggtttttcgagactaacaaggcagcagtaatgacaaactctttcaccaaactgagggaaatcagctgccgatactcacttccaccgggagaatatgtcttagttccctctacgttttatccgcgtcaagaagccgagttccttctaagaatattttcggagaaaccgcacgaagcacgtgaaattgacgtggaaacaaaaataatgactacaccaaagccctcagtttctacggaggaggccgaagacatcgataagaaattttggaaaacatttcagcaattttcaggagaggatggggaagttgatcaatatgaactgcaggaaatcttgagccgagctttcgccagtttggtaaattcgaaccagttcagcctggaagcttgcagaagtatgattgcaatgttcgatatagacaaaactggcgcactaggctacaaagagttcagggcgctgtggaccatactacgtcagtggaaggacgtcttccaccgttatgacaaagatcaaagtggagatatgaacctctatgagctccgagaagctctcagtgcgttaggttatcaactcagtaacactgcactaagctccattcacctgcggtatcacaacaagaaagggaccattccattcgacatatttatacagattttagtgcgagtaatagtcatgtttgatactttcaggaaaaacgtgatgaaacgcggcccacgagcaaacaaggcaacgttcactattgatgacttcatcgagtctgccttgacagtgtga

Transcript

evm.model.Ap13.1750

ATGTCCCTTAAGCGCGCCCTACCGAGAGAGAAGTACCTTTCCCTTCAGAGGGATCTCCAGAAGAAAGGTGTTTTATATGAAGACAGAGATTTCCCGCCAGTTTCCCGCAGCCTCTTCACTAAGACGCGTCCATCTGTTAGTCTTCAATGGAAAAGGCCAAAGGACATCTGCAAAAAAGAGCCCAAGTTTTTCACCAAAGGAGTAAGCCGAACAGACATCGCTCAAGGACGAATGCTGAACTGCTGGTTTGTGGCAGCCGTGGCTTCTTTGACAGACGCCAAGGAGTTATTTGACGCCGTGTGCCCAGATCAAAGCTTTGATGAGCGTACTTACTGCGGAATGTTCAGATTTAACTTTTGGCGATTTGGTGAATGGGTGGAGGTCATAATTGATGACTTTTTGCCTACCCACAATGGCAAGTTATATTACGCTCGCTCAGATGACCCGGACGAATTCTGGAGCGCATTGTTAGAGAAGGCTTATGCTAAAGTTTGCGGATCCTACGAAGCCATGGGTTTAGGACGTATAAGTGAAGCTTTGCAAGATTTTACAGGTGGAGTTATCGAGATGATCAACCTACAAACACCTCCAGCTGAGGGATCGCCTGACGTCTATAGAGTGTTGGAAAAGGCACATGAGCGTCACTCGCTGATGGGCGCTTCAATAGAGACAAGCTCACAGACCATTCAGAGAACGTTGCCAAATGGACTTATAACTGGACATGCTTACTCAATAACAGGTTTTGCTCAGGTTGATTTACCGACATTCCGCGGTCTTAAGCTAATTCGCCTCCGAAATCCTCATGGAAATAGTTCAGAGTGGAAGGGAGCTTGGAGTGACAGGTCTGACGAGTGGTATCAGTTATCAACAGAAGAGCGAAAGAGACTGAATCTTGTGTTTGACGATGACGGGGAATTTTGGATGACAATGGAAGATTTTCAGGCGAATTTTACACGAGTAGAGATATGCATGCTTACTCCAGACAGTGTTTTGGAGGAGGACCAGAAGAAATCATGGAAGATAAGACGAGAGAAAGGTCGCTGGCAAACGGACGCTACAGCTGGTGGCTGCAGGAACTTTATAGAGACATTCCACATTAATCCTCAGATAAGGATTGAGTTACAAGACCCGGATGAGGACGATGACGAAGACCGCTGTTCAATTGTAGGGTCGCTCATGCGCATTGATCGAAAGAGAACCCCAGCTAACGATAGACCACCAATTGGGTTCGCCATCTATAAGATACCAGAAGACCTGCGTGGTACCAAACAGCGTTTTGGCAGAAGGTTTTTCGAGACTAACAAGGCAGCAGTAATGACAAACTCTTTCACCAAACTGAGGGAAATCAGCTGCCGATACTCACTTCCACCGGGAGAATATGTCTTAGTTCCCTCTACGTTTTATCCGCGTCAAGAAGCCGAGTTCCTTCTAAGAATATTTTCGGAGAAACCGCACGAAGCACGTGAAATTGACGTGGAAACAAAAATAATGACTACACCAAAGCCCTCAGTTTCTACGGAGGAGGCCGAAGACATCGATAAGAAATTTTGGAAAACATTTCAGCAATTTTCAGGAGAGGATGGGGAAGTTGATCAATATGAACTGCAGGAAATCTTGAGCCGAGCTTTCGCCAGTTTGGTAAATTCGAACCAGTTCAGCCTGGAAGCTTGCAGAAGTATGATTGCAATGTTCGATATAGACAAAACTGGCGCACTAGGCTACAAAGAGTTCAGGGCGCTGTGGACCATACTACGTCAGTGGAAGGACGTCTTCCACCGTTATGACAAAGATCAAAGTGGAGATATGAACCTCTATGAGCTCCGAGAAGCTCTCAGTGCGTTAGGTTATCAACTCAGTAACACTGCACTAAGCTCCATTCACCTGCGGTATCACAACAAGAAAGGGACCATTCCATTCGACATATTTATACAGATTTTAGTGCGAGTAATAGTCATGTTTGATACTTTCAGGAAAAACGTGATGAAACGCGGCCCACGAGCAAACAAGGCAACGTTCACTATTGATGACTTCATCGAGTCTGCCTTGACAGTGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VT65	Calpain-B OS=Drosophila melanogaster OX=7227 GN=CalpB PE=1 SV=2
O35920	Calpain-9 OS=Rattus norvegicus OX=10116 GN=Capn9 PE=2 SV=2
O35350	Calpain-1 catalytic subunit OS=Mus musculus OX=10090 GN=Capn1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000851 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01067 all species →	Calpain_III	Calpain large subunit, domain III	Domain	Interproscan
PF13405 all species →	EF-hand_6	EF-hand domain	Domain	Interproscan
PF00648 all species →	Peptidase_C2	Calpain family cysteine protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022682 all species →	Domain	Peptidase C2, calpain, large subunit, domain III	Interproscan
IPR033883 all species →	Domain	Calpain subdomain III	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR001300 all species →	Domain	Peptidase C2, calpain, catalytic domain	Interproscan
IPR022683 all species →	Domain	Peptidase C2, calpain, domain III	Interproscan
IPR050420 all species →	Family	Calpain	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR036213 all species →	Homologous_superfamily	Calpain large subunit, domain III superfamily	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR022684 all species →	Family	Peptidase C2, calpain family	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10183 all species →	CALPAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004198 all species →	Molecular Function	calcium-dependent cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.1750.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.