Genomic Location: Ap13:19431759...19441094
NR annotation: XP_020608487.1, uncharacterized protein LOC110047095 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap13.1816 |
| Transcript |
| evm.model.Ap13.1816 |
| Protein |
| evm.model.Ap13.1816 |
| UniProt accession | Description |
|---|---|
| Q5ZQU0 | Sushi, nidogen and EGF-like domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Sned1 PE=2 SV=2 |
| Q70E20 | Sushi, nidogen and EGF-like domain-containing protein 1 OS=Mus musculus OX=10090 GN=Sned1 PE=2 SV=2 |
| O08523 | Alpha-tectorin OS=Mus musculus OX=10090 GN=Tecta PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000206 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00041 all species → | fn3 | Fibronectin type III domain | Domain | Interproscan |
| PF06119 all species → | NIDO | Nidogen-like | Family | Interproscan |
| PF00431 all species → | CUB | CUB domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003961 all species → | Domain | Fibronectin type III | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR036116 all species → | Homologous_superfamily | Fibronectin type III superfamily | Interproscan |
| IPR003886 all species → | Domain | NIDO domain | Interproscan |
| IPR000859 all species → | Domain | CUB domain | Interproscan |
| IPR051495 all species → | Family | Epithelial Barrier and Cell Signaling Protein | Interproscan |
| IPR035914 all species → | Homologous_superfamily | Spermadhesin, CUB domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13802 all species → | MUCIN 4-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0007160 all species → | Biological Process | cell-matrix adhesion | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
evm.model.Ap13.1816.Transcript abundance of evm.model.Ap13.1816 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
