Genomic Location: Ap13:19534734...19612542
NR annotation: CAH3128064.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap13.1824 |
| Transcript |
| evm.model.Ap13.1824 |
| Protein |
| evm.model.Ap13.1824 |
| UniProt accession | Description |
|---|---|
| B3EWY9 | Mucin-like protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1 |
| Q8JZM8 | Mucin-4 OS=Mus musculus OX=10090 GN=Muc4 PE=2 SV=2 |
| Q99102 | Mucin-4 OS=Homo sapiens OX=9606 GN=MUC4 PE=1 SV=5 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000206 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00530 all species → | SRCR | Scavenger receptor cysteine-rich domain | Domain | Interproscan |
| PF00431 all species → | CUB | CUB domain | Domain | Interproscan |
| PF12662 all species → | cEGF | Complement Clr-like EGF-like | Domain | Interproscan |
| PF05970 all species → | PIF1 | PIF1-like helicase | Family | Interproscan |
| PF06119 all species → | NIDO | Nidogen-like | Family | Interproscan |
| PF00041 all species → | fn3 | Fibronectin type III domain | Domain | Interproscan |
| PF00094 all species → | VWD | von Willebrand factor type D domain | Domain | Interproscan |
| PF07645 all species → | EGF_CA | Calcium-binding EGF domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000152 all species → | PTM | EGF-type aspartate/asparagine hydroxylation site | Interproscan |
| IPR001190 all species → | Domain | SRCR domain | Interproscan |
| IPR003961 all species → | Domain | Fibronectin type III | Interproscan |
| IPR036772 all species → | Homologous_superfamily | SRCR-like domain superfamily | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR001881 all species → | Domain | EGF-like calcium-binding domain | Interproscan |
| IPR035914 all species → | Homologous_superfamily | Spermadhesin, CUB domain superfamily | Interproscan |
| IPR001846 all species → | Domain | von Willebrand factor, type D domain | Interproscan |
| IPR000859 all species → | Domain | CUB domain | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR036116 all species → | Homologous_superfamily | Fibronectin type III superfamily | Interproscan |
| IPR009030 all species → | Homologous_superfamily | Growth factor receptor cysteine-rich domain superfamily | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR026823 all species → | Domain | Complement Clr-like EGF domain | Interproscan |
| IPR010285 all species → | Family | DNA helicase Pif1-like | Interproscan |
| IPR003886 all species → | Domain | NIDO domain | Interproscan |
| IPR017448 all species → | Domain | SRCR-like domain | Interproscan |
| IPR018097 all species → | Conserved_site | EGF-like calcium-binding, conserved site | Interproscan |
| IPR051495 all species → | Family | Epithelial Barrier and Cell Signaling Protein | Interproscan |
| IPR005533 all species → | Domain | AMOP domain | Interproscan |
| IPR049883 all species → | Domain | NOTCH1 EGF-like calcium-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13802 all species → | MUCIN 4-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0000723 all species → | Biological Process | telomere maintenance | Interproscan |
| GO:0003678 all species → | Molecular Function | DNA helicase activity | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0007160 all species → | Biological Process | cell-matrix adhesion | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
evm.model.Ap13.1824.Transcript abundance of evm.model.Ap13.1824 across 49 RNA-seq samples of Astrangia poculata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 1 | 1.57 | 22.05 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
