Gene detail

Detailed information of evm.model.Ap13.1854 in Astrangia poculata

Genomic Location: Ap13:19845348...19879837
NR annotation: XP_020608531.1, protein sidekick-1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.1854

atgcgttatacgggagcggtttcaggcgagattgctgtcccaaatgaaggcgacatccgtttagtcgatggaggtgctccaagccagggaagggtggagatctatatcaacggctcttggtcgactgtctgtgatcaatggttcggttataacgagggtcgagtagtatgtaaacagcttggtcttcctgggctgtctgatatgcattataaggctccctttggtcaaggcaatgggtccatattgagtgagcaatataactgtcaagaaaacgatacttcactactgaactgctctaaaaccggtcacattttcgactactgtagccacgaagatgacgtagggatttcttgcggaccgcttgtagcggcagaatgtggcggattagtgacggaaccagttggacagctctttttcaaagggggtgagaaagtaaatgagaacgagtgccagtggagcataggggacacttctgagccaactggcgatcgcgtgattcttgtaattgatccggttgaacattgtagttctgaagtatccgttcgagatcgatttggtaaggttcttttggatagctactgtggtccatcggaaagattgtttttgaatgtttcgtctctaaacgttactgtcaaggttaaatcaagaagcaggtacaatccgtttgttgctcgttatgccattttgaacggcagcattgattcagcattacaggttgatggatggaatgtcactgttgtaaatgtttctcaaaccagtattacgtttcaatggccaaacctaaccgatgtgcttggaaacgaggttctggcttatggcgcccttgtggaaaacacttctggtgaaaaagtatcaggcgacattgtttttctaaacgtcacgtcgataaggatagacgatctaaggggggcgactgagtatcgggtctttgttgttgccgtggatgtgcttggacaaccacacaggagttcacaagccttggcttcgacagaggaaggcgtaccatctagaagtccttactttcgtcatattgaagacaaatatattaaagttgacagcattaacatttcaatatctccaattcccgaacaatatcacaatggcagacttcttggctatagcatttcctatgatgctcagtgttcccaaaactcatctggccaagttaccgtcagtgcatccaccagaagttacgttttaactgggctcctgccaggaacacagtactacattcgtgttgctgggtttacctctactggcagtggaccttattatggcagaaacgtgtacaccacttgtttaggacaaacaactctgaccgaaagaaacggcacgctacacagccctaattacccgtgttcctatggaggattgcaatattgccgctggacaattgaaccacaactaagcgggaacgttgtcaagacgatatggattgagtttaatgcctttggtctcactggggatgtcccttactgcaggtcagaagattggcttggtgttgagacaggagagaacgtccatactgataatgacaccttattatgtgattatattggacccttcactctcgttgtacacggtgaccaagcaaaaatatcatttcgaacacgcagcagatatagtaacaaccgagggttttcagcctggtatcttggacttcgagacctttttatagatattcatctatcttcatggcatctatcagttcacaacattacttcatcgtcagcacgagtggagtgggcagattttcccgtcaatgtattcatatctcacttcatggtgatgttcaccgaagaaaacaaaaatatctcgttcctgttcaaagtcaactccttgtctgatcgatcttataatgtacaaaagttgttaaagccacaccgaatgtacaaattccatgtacttgcgtttacgggaagcatcgacaacgaaacgtattctactgaaatggagtcagtcctcactggagaaggagctcctagtgatgcaccaacaaatgtgcgcgcaaggaacttccaattaagtgatgttcttgtattgtgggatgcggtgaagccagaggatgctaatggtcagatacaaggttatacagtctattacagggaatacagacattactattacggtgatcatgcggaaagcgttaacattaccgacccgaacgtatttcagttggttttaagtggtttagatgctggacgaaagtaccaaatagccgtgtcagctttcacttcagaaggtgaaggacctcgatcaccatggctatcaatcacagtcggttgcggtggtaatttcaaccagtcttttggaagaatcaacatttccaaatctgattacggtgatctacgatgtaactggacaatcagcagtgttggcatcagcaatgcggttctccttctttcgatgaaacaactctactttgactactgctggacaacgtggacattggccactcctaagccaacagtcaaggtaccgtatcgacacttggaatcaaatgagaattttaccgttgacttttgtagggaatttctgaaggtatattcaagcagtggttcagagattttcagtctggaaaggtgctctgctaatcggccaggcgtggtggagttacagttttcgggaggagacttccttactgtacaaacctacttgttcagcagatacagccgtctggagattgaatttgttgtaatacgaagaggtctacaattagttgttcaaattgtggataacgctatccaccggataaatcactatccagtggatagcaaagcagtagaaaacgatgttttaccagctgcactggttgccagatttaccactctttctccttcaaccacatggaatattcatggctacaacaccagtcagacaagtttatttgttgactggagcaacgtgccaggaagtttacaagtggatttcttcattttgtctatgaatcaaacaaggccacatggcaagagagacgagagaaacaacggaaggacatcgtttcttcgtatagtaaactcctcaactacatcgatgaatgtgtcaaacctcccggtattcagtcagtacattgtccttgcttatctggttgatgtaaatggtgacgtctataaaagtgagcgcatagttgtcgacacagacgagggtgtaccacgacgcggaccctatctgtacagctgggatgtgaacgttttagttttcagcatcagttttacgcgagaagatattgacccagaagacgctcagggaagagtattaggttatgtagttaaatacgctacgataaatcaaccaaacgttaccaaaacgatcacattcgatacgaacaccacgagaattacattaaggaacctcacagaaggaaccacatacctcatagctgtcgctggattcactagcaaaggaactggccagtacagacctcatgcagcaacgcatgaagaagcacttctcatcgaggaagttcgaacatttccagtaataatctatagacctgactacagacccaaacgcaatgaacgcaatggtgaaagaaaacgtctggcgtcaggtcacgttggctgtgaaccgggaatccgggaaggtcgcctcgcagtgtgtggtggctaccttacagaggatagcgactacttctccagccctaactatcccaacagccctcataattttgatgagcgctttcctatatatgatcgagaaactcgctgcttttggaatattaatcctcgatccgatgcatcgatgatatggttgacgttcgccgacctttctcttggtagaagatacgatgacaacaattgcggtggaggtgttcgtatttctgccccgtcgaatgaggacaaaaatgacaaatatggaagatttctcttggacgtttgtggacaaataacaaacgagacactactgattgaaggaggaattgtaaatcttcatgcagatggttttgaacaacacaaatatgattctcgtctcaatcattcaagaatcttggcacattacagatccgaacccggaaatatcaccaccataataggtgaagagcttaactcgtggactggaattcaagccaacgccagcagttcatctattgatctgtcatggacatcacctccaggcggtttacgtagcgtgtccaccgttcaacaatatctcatcttgtttaacactattccgtccagagggttttacagggcgctttggttacctgcaaacaaaacccacgtaatgatttcaggattacgccctttcacaaactacagcttgatggtggtcgccatctttactgacgaaagcatacgcgaaaatacaggttggattcgaaaaccaacggaggaaggagagccaacaagaagcgcttacatccgggacgctcttgctatcgattacagcacgatttatatcagttgggaaaggattccgcagagggatgttggtggtatactgcgaggatatcgaatatatatctcactcgattactaccacggccttgtcaggaatataactgtaggcccggatatacacgaggcgaatatcactggacttcagtcgtacacctcttacatcgtatgggtaaaaccgttcacatccaagggagaaagtagggacaagaatgaaaggtggattaggacaaaatgtggatcagctctacacaacagttcaggtgtcattcaaagtcctggatttcctcgcaaagttgaatattcggaatgtacttgggacatttatcccgaagatggaaacaagagcgttctactcacctttggacatttcgatcttccactgtccttcaaatgcgaagaattctatgtttctgttagagatgacagtggtataaagcccgaacttatctgcggcgagagaggtccattcactttcttggcacacaagtttaaaatcgactacaaatccaccgatacacagaaatcgggtcccgatttctag

Transcript

evm.model.Ap13.1854

ATGCGTTATACGGGAGCGGTTTCAGGCGAGATTGCTGTCCCAAATGAAGGCGACATCCGTTTAGTCGATGGAGGTGCTCCAAGCCAGGGAAGGGTGGAGATCTATATCAACGGCTCTTGGTCGACTGTCTGTGATCAATGGTTCGGTTATAACGAGGGTCGAGTAGTATGTAAACAGCTTGGTCTTCCTGGGCTGTCTGATATGCATTATAAGGCTCCCTTTGGTCAAGGCAATGGGTCCATATTGAGTGAGCAATATAACTGTCAAGAAAACGATACTTCACTACTGAACTGCTCTAAAACCGGTCACATTTTCGACTACTGTAGCCACGAAGATGACGTAGGGATTTCTTGCGGACCGCTTGTAGCGGCAGAATGTGGCGGATTAGTGACGGAACCAGTTGGACAGCTCTTTTTCAAAGGGGGTGAGAAAGTAAATGAGAACGAGTGCCAGTGGAGCATAGGGGACACTTCTGAGCCAACTGGCGATCGCGTGATTCTTGTAATTGATCCGGTTGAACATTGTAGTTCTGAAGTATCCGTTCGAGATCGATTTGGTAAGGTTCTTTTGGATAGCTACTGTGGTCCATCGGAAAGATTGTTTTTGAATGTTTCGTCTCTAAACGTTACTGTCAAGGTTAAATCAAGAAGCAGGTACAATCCGTTTGTTGCTCGTTATGCCATTTTGAACGGCAGCATTGATTCAGCATTACAGGTTGATGGATGGAATGTCACTGTTGTAAATGTTTCTCAAACCAGTATTACGTTTCAATGGCCAAACCTAACCGATGTGCTTGGAAACGAGGTTCTGGCTTATGGCGCCCTTGTGGAAAACACTTCTGGTGAAAAAGTATCAGGCGACATTGTTTTTCTAAACGTCACGTCGATAAGGATAGACGATCTAAGGGGGGCGACTGAGTATCGGGTCTTTGTTGTTGCCGTGGATGTGCTTGGACAACCACACAGGAGTTCACAAGCCTTGGCTTCGACAGAGGAAGGCGTACCATCTAGAAGTCCTTACTTTCGTCATATTGAAGACAAATATATTAAAGTTGACAGCATTAACATTTCAATATCTCCAATTCCCGAACAATATCACAATGGCAGACTTCTTGGCTATAGCATTTCCTATGATGCTCAGTGTTCCCAAAACTCATCTGGCCAAGTTACCGTCAGTGCATCCACCAGAAGTTACGTTTTAACTGGGCTCCTGCCAGGAACACAGTACTACATTCGTGTTGCTGGGTTTACCTCTACTGGCAGTGGACCTTATTATGGCAGAAACGTGTACACCACTTGTTTAGGACAAACAACTCTGACCGAAAGAAACGGCACGCTACACAGCCCTAATTACCCGTGTTCCTATGGAGGATTGCAATATTGCCGCTGGACAATTGAACCACAACTAAGCGGGAACGTTGTCAAGACGATATGGATTGAGTTTAATGCCTTTGGTCTCACTGGGGATGTCCCTTACTGCAGGTCAGAAGATTGGCTTGGTGTTGAGACAGGAGAGAACGTCCATACTGATAATGACACCTTATTATGTGATTATATTGGACCCTTCACTCTCGTTGTACACGGTGACCAAGCAAAAATATCATTTCGAACACGCAGCAGATATAGTAACAACCGAGGGTTTTCAGCCTGGTATCTTGGACTTCGAGACCTTTTTATAGATATTCATCTATCTTCATGGCATCTATCAGTTCACAACATTACTTCATCGTCAGCACGAGTGGAGTGGGCAGATTTTCCCGTCAATGTATTCATATCTCACTTCATGGTGATGTTCACCGAAGAAAACAAAAATATCTCGTTCCTGTTCAAAGTCAACTCCTTGTCTGATCGATCTTATAATGTACAAAAGTTGTTAAAGCCACACCGAATGTACAAATTCCATGTACTTGCGTTTACGGGAAGCATCGACAACGAAACGTATTCTACTGAAATGGAGTCAGTCCTCACTGGAGAAGGAGCTCCTAGTGATGCACCAACAAATGTGCGCGCAAGGAACTTCCAATTAAGTGATGTTCTTGTATTGTGGGATGCGGTGAAGCCAGAGGATGCTAATGGTCAGATACAAGGTTATACAGTCTATTACAGGGAATACAGACATTACTATTACGGTGATCATGCGGAAAGCGTTAACATTACCGACCCGAACGTATTTCAGTTGGTTTTAAGTGGTTTAGATGCTGGACGAAAGTACCAAATAGCCGTGTCAGCTTTCACTTCAGAAGGTGAAGGACCTCGATCACCATGGCTATCAATCACAGTCGGTTGCGGTGGTAATTTCAACCAGTCTTTTGGAAGAATCAACATTTCCAAATCTGATTACGGTGATCTACGATGTAACTGGACAATCAGCAGTGTTGGCATCAGCAATGCGGTTCTCCTTCTTTCGATGAAACAACTCTACTTTGACTACTGCTGGACAACGTGGACATTGGCCACTCCTAAGCCAACAGTCAAGGTACCGTATCGACACTTGGAATCAAATGAGAATTTTACCGTTGACTTTTGTAGGGAATTTCTGAAGGTATATTCAAGCAGTGGTTCAGAGATTTTCAGTCTGGAAAGGTGCTCTGCTAATCGGCCAGGCGTGGTGGAGTTACAGTTTTCGGGAGGAGACTTCCTTACTGTACAAACCTACTTGTTCAGCAGATACAGCCGTCTGGAGATTGAATTTGTTGTAATACGAAGAGGTCTACAATTAGTTGTTCAAATTGTGGATAACGCTATCCACCGGATAAATCACTATCCAGTGGATAGCAAAGCAGTAGAAAACGATGTTTTACCAGCTGCACTGGTTGCCAGATTTACCACTCTTTCTCCTTCAACCACATGGAATATTCATGGCTACAACACCAGTCAGACAAGTTTATTTGTTGACTGGAGCAACGTGCCAGGAAGTTTACAAGTGGATTTCTTCATTTTGTCTATGAATCAAACAAGGCCACATGGCAAGAGAGACGAGAGAAACAACGGAAGGACATCGTTTCTTCGTATAGTAAACTCCTCAACTACATCGATGAATGTGTCAAACCTCCCGGTATTCAGTCAGTACATTGTCCTTGCTTATCTGGTTGATGTAAATGGTGACGTCTATAAAAGTGAGCGCATAGTTGTCGACACAGACGAGGGTGTACCACGACGCGGACCCTATCTGTACAGCTGGGATGTGAACGTTTTAGTTTTCAGCATCAGTTTTACGCGAGAAGATATTGACCCAGAAGACGCTCAGGGAAGAGTATTAGGTTATGTAGTTAAATACGCTACGATAAATCAACCAAACGTTACCAAAACGATCACATTCGATACGAACACCACGAGAATTACATTAAGGAACCTCACAGAAGGAACCACATACCTCATAGCTGTCGCTGGATTCACTAGCAAAGGAACTGGCCAGTACAGACCTCATGCAGCAACGCATGAAGAAGCACTTCTCATCGAGGAAGTTCGAACATTTCCAGTAATAATCTATAGACCTGACTACAGACCCAAACGCAATGAACGCAATGGTGAAAGAAAACGTCTGGCGTCAGGTCACGTTGGCTGTGAACCGGGAATCCGGGAAGGTCGCCTCGCAGTGTGTGGTGGCTACCTTACAGAGGATAGCGACTACTTCTCCAGCCCTAACTATCCCAACAGCCCTCATAATTTTGATGAGCGCTTTCCTATATATGATCGAGAAACTCGCTGCTTTTGGAATATTAATCCTCGATCCGATGCATCGATGATATGGTTGACGTTCGCCGACCTTTCTCTTGGTAGAAGATACGATGACAACAATTGCGGTGGAGGTGTTCGTATTTCTGCCCCGTCGAATGAGGACAAAAATGACAAATATGGAAGATTTCTCTTGGACGTTTGTGGACAAATAACAAACGAGACACTACTGATTGAAGGAGGAATTGTAAATCTTCATGCAGATGGTTTTGAACAACACAAATATGATTCTCGTCTCAATCATTCAAGAATCTTGGCACATTACAGATCCGAACCCGGAAATATCACCACCATAATAGGTGAAGAGCTTAACTCGTGGACTGGAATTCAAGCCAACGCCAGCAGTTCATCTATTGATCTGTCATGGACATCACCTCCAGGCGGTTTACGTAGCGTGTCCACCGTTCAACAATATCTCATCTTGTTTAACACTATTCCGTCCAGAGGGTTTTACAGGGCGCTTTGGTTACCTGCAAACAAAACCCACGTAATGATTTCAGGATTACGCCCTTTCACAAACTACAGCTTGATGGTGGTCGCCATCTTTACTGACGAAAGCATACGCGAAAATACAGGTTGGATTCGAAAACCAACGGAGGAAGGAGAGCCAACAAGAAGCGCTTACATCCGGGACGCTCTTGCTATCGATTACAGCACGATTTATATCAGTTGGGAAAGGATTCCGCAGAGGGATGTTGGTGGTATACTGCGAGGATATCGAATATATATCTCACTCGATTACTACCACGGCCTTGTCAGGAATATAACTGTAGGCCCGGATATACACGAGGCGAATATCACTGGACTTCAGTCGTACACCTCTTACATCGTATGGGTAAAACCGTTCACATCCAAGGGAGAAAGTAGGGACAAGAATGAAAGGTGGATTAGGACAAAATGTGGATCAGCTCTACACAACAGTTCAGGTGTCATTCAAAGTCCTGGATTTCCTCGCAAAGTTGAATATTCGGAATGTACTTGGGACATTTATCCCGAAGATGGAAACAAGAGCGTTCTACTCACCTTTGGACATTTCGATCTTCCACTGTCCTTCAAATGCGAAGAATTCTATGTTTCTGTTAGAGATGACAGTGGTATAAAGCCCGAACTTATCTGCGGCGAGAGAGGTCCATTCACTTTCTTGGCACACAAGTTTAAAATCGACTACAAATCCACCGATACACAGAAATCGGGTCCCGATTTCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3EX02	MAM and fibronectin type III domain-containing protein 1 (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q5RDA4	Galectin-3-binding protein OS=Pongo abelii OX=9601 GN=LGALS3BP PE=1 SV=1
Q08380	Galectin-3-binding protein OS=Homo sapiens OX=9606 GN=LGALS3BP PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000210 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00530 all species →	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR001190 all species →	Domain	SRCR domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR050379 all species →	Family	Type I Cytokine Receptor	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR017448 all species →	Domain	SRCR-like domain	Interproscan
IPR036772 all species →	Homologous_superfamily	SRCR-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23036 all species →	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004896 all species →	Molecular Function	cytokine receptor activity	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0019221 all species →	Biological Process	cytokine-mediated signaling pathway	Interproscan
GO:0019955 all species →	Molecular Function	cytokine binding	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.1854.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.