Gene detail

Detailed information of evm.model.Ap13.1863 in Astrangia poculata

Genomic Location: Ap13:19972105...19988579
NR annotation: CAH3174859.1, unnamed protein product, partial [Porites lobata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.1863

caagctggattccaccatgttcatcgtaccagcagtgcactcagtcctcactgtgtatttgatgtggtaataccttcacaaaactcatctcagccagagaggattgtgggacagtactgtactcctgaacacatgactggcggagcggcggttggcgattacgatggagacggactggaggatgtttactttactgtgtttcacgacaagagcgtgctatacaaaaacaacggtgatggaactttcactgacgtcacagaagacacaggtattggaccgagctccctcgccaatggtgcagtctgggcagacgttgaccaagatggagatttagatctgtatgtgacaacagtgggtgataccaggcattatctttatattaattatggaggccgctttaaagaagaagccatgcagaggaactgctccatgcaaacaagtgacaaacgaaagctttctggaatgacgccaaacgttggtgattttgatcaagacggatttgccgatatttatgtgacagagtggcttccgcactctttaggaaagccgtcaacttcgaggcttcttaggaacataggtcaaggagcgcctgggtattttgaagacgtcacgtcagatgcaggggtagatatggatgatttctatgacggatcggctctcggtgaaggaacctacacacttggatcttcgtttacggactttgacaatgacggctggccggaattgctagtgactgcagattatggtgtgagtaaaatgttttggaacaatcaaaacagcaaattcacggagtgcacgcagtcctgtggcctgggcgcaaagcagaacgccaagggtcatgcaataggagactgggacaatgatggctacctcgactggttttctaccgccatgtggcagaaccgtagtgaatgttcaatgtctggctgcatgtatgtcgatagtggaaacgtgttattccgtaatcgaggaggaaaacagtttgaagaagccacagaccaggctggtgtggaaaatggaggtttgtcatggggagcagcattaatggattttgacaacaatggatatgtggatttcatctcgagcagtggaaatgactttaataggatgcatttgtggcaaaaccttggtgctggtcataacggaaaaacgcaagaggtttctgctttgtatggactgagtggcactgggaaaggacgaggtctgcttaaatgggactatgatgatgatggcgatgaagatatcttagtttgtaataacgttggagctccatttttctaccagtatcaacaaaaagaaccaaacaactggataagagtacgtgtcgtacatcgatgcctaaagaatcagaataaattatgcgacagcattggtgcccgggtacaagttaccatgggaaataaccacaaacagatacaagaaatcggttccagtacacacttcctgggtcaaagttctcgtgccgctcactttggactggggcgaaacagtggtcaggtgactgttaatgtcacgtggccgtctggtgtcacgataacgtactctgacgtgcctcctgatacaagactgcgagtagtacagcccaacagttctgattcagggaaaacgttttcatactcgtcgcttgataaatgtttctctttgtacgttacacagattaatcaacagccctcaaaatcaaaagtcaccataaattcagatgggaaaacgttggatttgaaaataaatcttggcgtagaacacaaggacttaagcaacgagaccttcaagtacacagtggaagtgttaccaagtccaggtgggcaaccgctgaccaccagtaccacgtcttatgttgtgttttcacaaagcactgcgagcgaatgtcaagcgggaaggaaaataggatccacgccgagtgtcacagatgatagacgtctggacggtacctcaaacaacaatgatcacgtgttttggggagctgcactggaggatgtggcacgtgatgcacctgcaatgtacgctgacggcatcgctcagcccgcgggcgctaacaggccctctccgagagaaataagcaatgagctctttcaacagattgaatcaaagattagcgctcgtcgactcagtgattttcatccaaattttggacagttcctatcgcatgacacagattcatcacctacgctgtcaagtcgcgattttgatataatgagtgacgtattgctacctatcccagttccaaagggagatattcactttgacagacaggatgaaggcaacgtttaccttccgttcgtgcgtacgaacttcaacagatgcacaggccgccgtaccaacactccaaggcaacaagttaataaactgacgtcgtttatcgatggctctgttgtgtacggtgaaacagaagaaagaaacaaggcgttacgagaatttaaaggtggaaagatgaaagttgggctaggtgatctgttgccagagaacacagaagctttgtcgaatgacaaccctgttggtcgcgatgcaagccgtctggtggctgcaggggactcaagagccaatgaacagccaggactgatcgcacttcacactctctttgtgcgggaacacaaccggctctgtgacgaatacaaaagcgagaatccacaggctactgatgaacagatattccaggccgcccgtcgcctggtagctgctgagatccaggccatcacgttccgtgaatacttgccagcggctttggggagcactcaatacatacctccttatcaggggtacaataagagcataaacgttggtataagcaacatgatgtcaacagcagccttcagattcggtcacagtcaagtcaacactcacttgtggcggtttgaagaggatggtacgatgtctcattacggacacctcgctcttagagacgtttacttttctcctgaaagagtgtcgagggagggaggaatagagcctctctttaggggtgcggtcagacaagctgcacaggaagtcgacttaaagatggtggatgacatgcggaatgctttgtttccatctggtcgtaaacttggttcagatttagcggcaaaaaacatacagcgcggaagagatcacggcttaccagattacaacacagcgagaaaggcgcttggtttgaaaggactcagcagtttttcagatgtcaccaaagattccaagactgctacaaaaatggaggacatttaccatgacataaacaatgttgacttatgggttggaggcttggctgaggaccacgagagtggcagtgaactgggaccgactttcagaacaatcctgatgcgtaacttcttgagaatcagagacggtgacagattctggtatgaacgttatctatccagtgaggaaatcgacaaggtccattccctcacgcttggcaagatcattcgtctgaacactggattcaaaagcgcgccagataacgtgtttttctccacggactactgcgcaagcgtgaaagattttcagtgcgtgccgaagacagactcttctgtaaccgaagctagcacaagcaacaccacgagaaatgctttaatagcaataagtgtaataatgttcgtggtcatagtcatacttggagcagttttggcttatttttggttccgttcccggcagacaaaaacgaaagttatcccagtcaaggaagcataccctaataatcaatag

Transcript

evm.model.Ap13.1863

CAAGCTGGATTCCACCATGTTCATCGTACCAGCAGTGCACTCAGTCCTCACTGTGTATTTGATGTGGTAATACCTTCACAAAACTCATCTCAGCCAGAGAGGATTGTGGGACAGTACTGTACTCCTGAACACATGACTGGCGGAGCGGCGGTTGGCGATTACGATGGAGACGGACTGGAGGATGTTTACTTTACTGTGTTTCACGACAAGAGCGTGCTATACAAAAACAACGGTGATGGAACTTTCACTGACGTCACAGAAGACACAGGTATTGGACCGAGCTCCCTCGCCAATGGTGCAGTCTGGGCAGACGTTGACCAAGATGGAGATTTAGATCTGTATGTGACAACAGTGGGTGATACCAGGCATTATCTTTATATTAATTATGGAGGCCGCTTTAAAGAAGAAGCCATGCAGAGGAACTGCTCCATGCAAACAAGTGACAAACGAAAGCTTTCTGGAATGACGCCAAACGTTGGTGATTTTGATCAAGACGGATTTGCCGATATTTATGTGACAGAGTGGCTTCCGCACTCTTTAGGAAAGCCGTCAACTTCGAGGCTTCTTAGGAACATAGGTCAAGGAGCGCCTGGGTATTTTGAAGACGTCACGTCAGATGCAGGGGTAGATATGGATGATTTCTATGACGGATCGGCTCTCGGTGAAGGAACCTACACACTTGGATCTTCGTTTACGGACTTTGACAATGACGGCTGGCCGGAATTGCTAGTGACTGCAGATTATGGTGTGAGTAAAATGTTTTGGAACAATCAAAACAGCAAATTCACGGAGTGCACGCAGTCCTGTGGCCTGGGCGCAAAGCAGAACGCCAAGGGTCATGCAATAGGAGACTGGGACAATGATGGCTACCTCGACTGGTTTTCTACCGCCATGTGGCAGAACCGTAGTGAATGTTCAATGTCTGGCTGCATGTATGTCGATAGTGGAAACGTGTTATTCCGTAATCGAGGAGGAAAACAGTTTGAAGAAGCCACAGACCAGGCTGGTGTGGAAAATGGAGGTTTGTCATGGGGAGCAGCATTAATGGATTTTGACAACAATGGATATGTGGATTTCATCTCGAGCAGTGGAAATGACTTTAATAGGATGCATTTGTGGCAAAACCTTGGTGCTGGTCATAACGGAAAAACGCAAGAGGTTTCTGCTTTGTATGGACTGAGTGGCACTGGGAAAGGACGAGGTCTGCTTAAATGGGACTATGATGATGATGGCGATGAAGATATCTTAGTTTGTAATAACGTTGGAGCTCCATTTTTCTACCAGTATCAACAAAAAGAACCAAACAACTGGATAAGAGTACGTGTCGTACATCGATGCCTAAAGAATCAGAATAAATTATGCGACAGCATTGGTGCCCGGGTACAAGTTACCATGGGAAATAACCACAAACAGATACAAGAAATCGGTTCCAGTACACACTTCCTGGGTCAAAGTTCTCGTGCCGCTCACTTTGGACTGGGGCGAAACAGTGGTCAGGTGACTGTTAATGTCACGTGGCCGTCTGGTGTCACGATAACGTACTCTGACGTGCCTCCTGATACAAGACTGCGAGTAGTACAGCCCAACAGTTCTGATTCAGGGAAAACGTTTTCATACTCGTCGCTTGATAAATGTTTCTCTTTGTACGTTACACAGATTAATCAACAGCCCTCAAAATCAAAAGTCACCATAAATTCAGATGGGAAAACGTTGGATTTGAAAATAAATCTTGGCGTAGAACACAAGGACTTAAGCAACGAGACCTTCAAGTACACAGTGGAAGTGTTACCAAGTCCAGGTGGGCAACCGCTGACCACCAGTACCACGTCTTATGTTGTGTTTTCACAAAGCACTGCGAGCGAATGTCAAGCGGGAAGGAAAATAGGATCCACGCCGAGTGTCACAGATGATAGACGTCTGGACGGTACCTCAAACAACAATGATCACGTGTTTTGGGGAGCTGCACTGGAGGATGTGGCACGTGATGCACCTGCAATGTACGCTGACGGCATCGCTCAGCCCGCGGGCGCTAACAGGCCCTCTCCGAGAGAAATAAGCAATGAGCTCTTTCAACAGATTGAATCAAAGATTAGCGCTCGTCGACTCAGTGATTTTCATCCAAATTTTGGACAGTTCCTATCGCATGACACAGATTCATCACCTACGCTGTCAAGTCGCGATTTTGATATAATGAGTGACGTATTGCTACCTATCCCAGTTCCAAAGGGAGATATTCACTTTGACAGACAGGATGAAGGCAACGTTTACCTTCCGTTCGTGCGTACGAACTTCAACAGATGCACAGGCCGCCGTACCAACACTCCAAGGCAACAAGTTAATAAACTGACGTCGTTTATCGATGGCTCTGTTGTGTACGGTGAAACAGAAGAAAGAAACAAGGCGTTACGAGAATTTAAAGGTGGAAAGATGAAAGTTGGGCTAGGTGATCTGTTGCCAGAGAACACAGAAGCTTTGTCGAATGACAACCCTGTTGGTCGCGATGCAAGCCGTCTGGTGGCTGCAGGGGACTCAAGAGCCAATGAACAGCCAGGACTGATCGCACTTCACACTCTCTTTGTGCGGGAACACAACCGGCTCTGTGACGAATACAAAAGCGAGAATCCACAGGCTACTGATGAACAGATATTCCAGGCCGCCCGTCGCCTGGTAGCTGCTGAGATCCAGGCCATCACGTTCCGTGAATACTTGCCAGCGGCTTTGGGGAGCACTCAATACATACCTCCTTATCAGGGGTACAATAAGAGCATAAACGTTGGTATAAGCAACATGATGTCAACAGCAGCCTTCAGATTCGGTCACAGTCAAGTCAACACTCACTTGTGGCGGTTTGAAGAGGATGGTACGATGTCTCATTACGGACACCTCGCTCTTAGAGACGTTTACTTTTCTCCTGAAAGAGTGTCGAGGGAGGGAGGAATAGAGCCTCTCTTTAGGGGTGCGGTCAGACAAGCTGCACAGGAAGTCGACTTAAAGATGGTGGATGACATGCGGAATGCTTTGTTTCCATCTGGTCGTAAACTTGGTTCAGATTTAGCGGCAAAAAACATACAGCGCGGAAGAGATCACGGCTTACCAGATTACAACACAGCGAGAAAGGCGCTTGGTTTGAAAGGACTCAGCAGTTTTTCAGATGTCACCAAAGATTCCAAGACTGCTACAAAAATGGAGGACATTTACCATGACATAAACAATGTTGACTTATGGGTTGGAGGCTTGGCTGAGGACCACGAGAGTGGCAGTGAACTGGGACCGACTTTCAGAACAATCCTGATGCGTAACTTCTTGAGAATCAGAGACGGTGACAGATTCTGGTATGAACGTTATCTATCCAGTGAGGAAATCGACAAGGTCCATTCCCTCACGCTTGGCAAGATCATTCGTCTGAACACTGGATTCAAAAGCGCGCCAGATAACGTGTTTTTCTCCACGGACTACTGCGCAAGCGTGAAAGATTTTCAGTGCGTGCCGAAGACAGACTCTTCTGTAACCGAAGCTAGCACAAGCAACACCACGAGAAATGCTTTAATAGCAATAAGTGTAATAATGTTCGTGGTCATAGTCATACTTGGAGCAGTTTTGGCTTATTTTTGGTTCCGTTCCCGGCAGACAAAAACGAAAGTTATCCCAGTCAAGGAAGCATACCCTAATAATCAATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6TMK4	Peroxinectin A OS=Dictyostelium discoideum OX=44689 GN=poxA PE=1 SV=1
Q8R481	Lactoperoxidase OS=Mesocricetus auratus OX=10036 GN=LPO PE=1 SV=1
P35419	Thyroid peroxidase OS=Mus musculus OX=10090 GN=Tpo PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001593 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13517 all species →	FG-GAP_3	FG-GAP-like repeat	Repeat	Interproscan
PF03098 all species →	An_peroxidase	Animal haem peroxidase	Domain	Interproscan
PF07593 all species →	UnbV_ASPIC	ASPIC and UnbV	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037120 all species →	Homologous_superfamily	Haem peroxidase domain superfamily, animal type	Interproscan
IPR013517 all species →	Repeat	FG-GAP repeat	Interproscan
IPR010255 all species →	Homologous_superfamily	Haem peroxidase superfamily	Interproscan
IPR028994 all species →	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR050702 all species →	Family	Peroxidase Activity and Reactive Species Generation	Interproscan
IPR019791 all species →	Family	Haem peroxidase, animal-type	Interproscan
IPR011519 all species →	Domain	ASPIC/UnbV	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11475 all species →	OXIDASE/PEROXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004601 all species →	Molecular Function	peroxidase activity	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.1863.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.