Gene detail

Detailed information of evm.model.Ap13.1889 in Astrangia poculata

Genomic Location: Ap13:20267055...20271997
NR annotation: XP_020601625.1, tubulin--tyrosine ligase-like protein 12 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap13.1889

atggcgtcgcattctatgggtaagaccacgtgcattagctgggaagatttccttgctcttcatcgaccacagctcctgtctatcggcttaccggaacatttatgggaaagactttacaagaagctatcgcctatcgcaagttacgacgccacggaggcatttgagttgcacaaagacgaacaatttgtgtccccgggtcgctggtctctccacgccaaacggaatttgcaaaaatttagcgacgtatttcttatcgagcacgcttggtcaagcgatggcggaccgactgctgagaaaaatttggaaaaattgccagaactattggcgagattgaaggaaatgatgactcgcccagcagaaaactcggccagtaatgagagaagcgacgaagccccgctagacagctcccaggttcttgcgcaaatcagtggagtcaacgaaaagaaagccaaagaaacccttcaatccactgacagtgatctaattgaagctttgtgtcaaatcacgggcgattctaatgaaactaaaaagccgtcgaaatccgacaggtcaaaaattatgaccttcgaggaattcaaaactggctttcttcacgccgtcggtatggagaaagcaaaattgctctccgaggaatacgttcacaaaatgtattgcagatacaaaagggaaaaggagcaatacccagaatcgatgggctttggttatggaacaacatcgacctacagttggtcagaggaagacgaaggcgcaatggcagtgtttgtgtctgttcctgtaacgacaaaaaagcgcgacgttgtgagcaaattgtcgacgaagcgctggactttgggcataaaaggctgcgctcctattatcgatggggaattttacggcaatgtttgtcccgatggatcgttttggacatttgattctcccggtttgttggtcatgacgcttcagaaaccggagaatgaagaatccgaattatggccggttttaatcaaaggagaaaagcatttgacagaaaaagaaatttccaatcaagcaagagacaagaatcatgaaactgattacaaaatgtaccaggtgttggagagtatgtggtattataaccagacgtatcaagcagtgacgcaagaaggcgataagcgtaaacctgtttggtatgtaatggatgagataggatcagccattgtgcatagtaatcaacccaatgtcaaatgttcaccattcgcttttgctggaactggagtgttttactcccttctctggcctgtgacagatttgaagccaggcgacatgtgttctagaaacttttgtcctctgctgagtatggcagaaacagaactgcaaagggaagcaaggcttttagcctgcaactcttcacttcctgaaagttgtccgagaaactttgtggtcgaacttgccaagtttcccaccgtggagaaggagaacaatgttatgatcaatgtcaactctctagaagcaaagaaggaaaaagtgaactgcgttcactcgaaaagcaaaaagttgaacttgaagttctttgttgaacaaaatggaagagagaagagaccggttttgagagatttaggttgcacacttgttgggtcatcaacagaagctgaagctgtatggctagagaggtggatcaggccagggcagagtatccagggtgatgcaagagtcaaccgtctcggaggggaagaacaccttctacatcggcaattgctttctacccatgttcaacgggtgtggggtaacgtaccttggtttccaatttcttacgacctgtcaacacacttggcagctttgtgtgctgagcattacttctgtggcatttccagttactggattttaagagcggcagatcccagcactctcagcatacaacccatcgtgaccagtgatctacgaagagtgatcaggtgcacagagattggtcatttggtggcgtcgcattactgctttcagacggctgtatgcaagaagaggcgtttctgtctccagtacgcagtcacagttaaatccctggtgccattacagctcctgatacacaacactccacatgtgaccctggcagagagcgagaccaacccgaaagatttcctggacgagtatgattcctcagctcttgtgtgtgttggctcgtcagacataaagaagaatggaatggtaaatcacaaggtgacgcacgaagagtttttgaaagacctcaacaccaattacttgacaaggatgcaaacgacatggggtgctgttcagtcaaaggttcacaagactattgctaaactgttttatgctgtagcaccaagtctttcttcttttcaagaaggaaatcggacggacctctgtgcggtgtacggtgttgatgtactattgaaggacagcttagagcctcttatcattggagtcgatcctacactgaggtttgacactcagaagtgtttttcagatgttgtggtcacagcatttggacagaatggtgagtgtttggatagtgtgaacatcagccaggtttctgtgagagaacagtga

Transcript

evm.model.Ap13.1889

ATGGCGTCGCATTCTATGGGTAAGACCACGTGCATTAGCTGGGAAGATTTCCTTGCTCTTCATCGACCACAGCTCCTGTCTATCGGCTTACCGGAACATTTATGGGAAAGACTTTACAAGAAGCTATCGCCTATCGCAAGTTACGACGCCACGGAGGCATTTGAGTTGCACAAAGACGAACAATTTGTGTCCCCGGGTCGCTGGTCTCTCCACGCCAAACGGAATTTGCAAAAATTTAGCGACGTATTTCTTATCGAGCACGCTTGGTCAAGCGATGGCGGACCGACTGCTGAGAAAAATTTGGAAAAATTGCCAGAACTATTGGCGAGATTGAAGGAAATGATGACTCGCCCAGCAGAAAACTCGGCCAGTAATGAGAGAAGCGACGAAGCCCCGCTAGACAGCTCCCAGGTTCTTGCGCAAATCAGTGGAGTCAACGAAAAGAAAGCCAAAGAAACCCTTCAATCCACTGACAGTGATCTAATTGAAGCTTTGTGTCAAATCACGGGCGATTCTAATGAAACTAAAAAGCCGTCGAAATCCGACAGGTCAAAAATTATGACCTTCGAGGAATTCAAAACTGGCTTTCTTCACGCCGTCGGTATGGAGAAAGCAAAATTGCTCTCCGAGGAATACGTTCACAAAATGTATTGCAGATACAAAAGGGAAAAGGAGCAATACCCAGAATCGATGGGCTTTGGTTATGGAACAACATCGACCTACAGTTGGTCAGAGGAAGACGAAGGCGCAATGGCAGTGTTTGTGTCTGTTCCTGTAACGACAAAAAAGCGCGACGTTGTGAGCAAATTGTCGACGAAGCGCTGGACTTTGGGCATAAAAGGCTGCGCTCCTATTATCGATGGGGAATTTTACGGCAATGTTTGTCCCGATGGATCGTTTTGGACATTTGATTCTCCCGGTTTGTTGGTCATGACGCTTCAGAAACCGGAGAATGAAGAATCCGAATTATGGCCGGTTTTAATCAAAGGAGAAAAGCATTTGACAGAAAAAGAAATTTCCAATCAAGCAAGAGACAAGAATCATGAAACTGATTACAAAATGTACCAGGTGTTGGAGAGTATGTGGTATTATAACCAGACGTATCAAGCAGTGACGCAAGAAGGCGATAAGCGTAAACCTGTTTGGTATGTAATGGATGAGATAGGATCAGCCATTGTGCATAGTAATCAACCCAATGTCAAATGTTCACCATTCGCTTTTGCTGGAACTGGAGTGTTTTACTCCCTTCTCTGGCCTGTGACAGATTTGAAGCCAGGCGACATGTGTTCTAGAAACTTTTGTCCTCTGCTGAGTATGGCAGAAACAGAACTGCAAAGGGAAGCAAGGCTTTTAGCCTGCAACTCTTCACTTCCTGAAAGTTGTCCGAGAAACTTTGTGGTCGAACTTGCCAAGTTTCCCACCGTGGAGAAGGAGAACAATGTTATGATCAATGTCAACTCTCTAGAAGCAAAGAAGGAAAAAGTGAACTGCGTTCACTCGAAAAGCAAAAAGTTGAACTTGAAGTTCTTTGTTGAACAAAATGGAAGAGAGAAGAGACCGGTTTTGAGAGATTTAGGTTGCACACTTGTTGGGTCATCAACAGAAGCTGAAGCTGTATGGCTAGAGAGGTGGATCAGGCCAGGGCAGAGTATCCAGGGTGATGCAAGAGTCAACCGTCTCGGAGGGGAAGAACACCTTCTACATCGGCAATTGCTTTCTACCCATGTTCAACGGGTGTGGGGTAACGTACCTTGGTTTCCAATTTCTTACGACCTGTCAACACACTTGGCAGCTTTGTGTGCTGAGCATTACTTCTGTGGCATTTCCAGTTACTGGATTTTAAGAGCGGCAGATCCCAGCACTCTCAGCATACAACCCATCGTGACCAGTGATCTACGAAGAGTGATCAGGTGCACAGAGATTGGTCATTTGGTGGCGTCGCATTACTGCTTTCAGACGGCTGTATGCAAGAAGAGGCGTTTCTGTCTCCAGTACGCAGTCACAGTTAAATCCCTGGTGCCATTACAGCTCCTGATACACAACACTCCACATGTGACCCTGGCAGAGAGCGAGACCAACCCGAAAGATTTCCTGGACGAGTATGATTCCTCAGCTCTTGTGTGTGTTGGCTCGTCAGACATAAAGAAGAATGGAATGGTAAATCACAAGGTGACGCACGAAGAGTTTTTGAAAGACCTCAACACCAATTACTTGACAAGGATGCAAACGACATGGGGTGCTGTTCAGTCAAAGGTTCACAAGACTATTGCTAAACTGTTTTATGCTGTAGCACCAAGTCTTTCTTCTTTTCAAGAAGGAAATCGGACGGACCTCTGTGCGGTGTACGGTGTTGATGTACTATTGAAGGACAGCTTAGAGCCTCTTATCATTGGAGTCGATCCTACACTGAGGTTTGACACTCAGAAGTGTTTTTCAGATGTTGTGGTCACAGCATTTGGACAGAATGGTGAGTGTTTGGATAGTGTGAACATCAGCCAGGTTTCTGTGAGAGAACAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UDE2	Tubulin--tyrosine ligase-like protein 12 OS=Mus musculus OX=10090 GN=Ttll12 PE=1 SV=1
Q09512	Tubulin--tyrosine ligase-like protein 12 OS=Caenorhabditis elegans OX=6239 GN=ttll-12 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008607 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03133 all species →	TTL	Tubulin-tyrosine ligase family	Family	Interproscan
PF04969 all species →	CS	CS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004344 all species →	Family	Tubulin-tyrosine ligase/Tubulin polyglutamylase	Interproscan
IPR007052 all species →	Domain	CS domain	Interproscan
IPR008978 all species →	Homologous_superfamily	HSP20-like chaperone	Interproscan
IPR027749 all species →	Family	Tubulin--tyrosine ligase-like protein 12	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46088 all species →	TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0036211 all species →	Biological Process	protein modification process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap13.1889.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.